Gene Information

Name : ssaO
Accession : NP_456112.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : putative type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1629358 - 1629735 bp
Length : 378 bp
Strand : -
Note : Similar to Salmonella typhimurium secretion system apparatus protein SsaO SW:SSAO_SALTY (P74858) (125 aa) fasta scores: E(): 0, 98.4% id in 125 aa

DNA sequence : 
ATGGAAACTTTGCTGGAGATAATCGCGCGGCGTGAAAAGCAATTACGCAGCAAACTTACCGTGCTTGATCAGCAGCAACA
GGCGATTATTACTGAACAGCAGATTTGCCAGACGCGCGCTTTAGCAGTGACTACCAGACTGAAAGAATTAATGGGCTGGC
AAGGTACGTTATCTTGTCATTTATTGTTGGATAAGAAACAACAAATGGCCGGACTATTCACTCAGGCGCAGAGCTTTTTG
ACGCAACGGCAGCAGTTAGAGAATCAGTATCAGCAGCTTGTCTCCAGGCGAAGCGAATTACAGAAGAATTTTAATGCGCT
TATGAAAAAGAAAGAAAAAATTACTATGGTATTAAGCGATGCGTATTACCAAAGTTGA

Protein sequence : 
METLLEIIARREKQLRSKLTVLDQQQQAIITEQQICQTRALAVTTRLKELMGWQGTLSCHLLLDKKQQMAGLFTQAQSFL
TQRQQLENQYQQLVSRRSELQKNFNALMKKKEKITMVLSDAYYQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaO NP_456112.1 putative type III secretion protein Virulence SPI-2 Protein 1e-36 100
ssaO NP_805087.1 type III secretion protein Virulence SPI-2 Protein 1e-36 100
ssaO NP_460381.1 type III secretion system apparatus protein Virulence SPI-2 Protein 2e-36 99
ssaO CAA70538.1 secretion system apparatus Virulence SPI-2 Protein 1e-36 99
ssaO YP_216424.1 secretion system apparatus protein SsaO Virulence SPI-2 Protein 1e-36 99
ssaO AAX49618.1 SsaO Virulence SPI-2 Protein 8e-31 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaO NP_456112.1 putative type III secretion protein VFG0516 Protein 4e-37 99