Gene Information

Name : yscR
Accession : NP_456109.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : putative type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1627339 - 1627986 bp
Length : 648 bp
Strand : -
Note : Similar to Salmonella typhimurium virulence protein YscR SW:YSCR_SALTY (P74890) (215 aa) fasta scores: E(): 0, 99.5% id in 215 aa, and to Yersinia pestis type III secretion protein YscR TR:AAC69787 (EMBL:AF074612) (217 aa) fasta scores: E(): 0, 54.0% id i

DNA sequence : 
ATGTCTTTACCCGATTCGCCTTTGCAACTGATTGGTATATTGTTTCTGCTTTCAATACTGCCTCTCATTATCGTCATGGG
AACCTCTTTCCTTAAACTGGCGGTGGTATTTTCGATTTTACGAAATGCTCTGGGTATTCAACAAGTTCCTCCAAATATCG
CACTGTATGGCTTCGCGCTTGTACTTTCCTTATTCATTATGGGGCCGACGCTATTAGCTGTAAAAGAGCGCTGGCATCCG
GTTCAGGTCGCTGGCGCTCCTTTCTGGACGTCTGAGTGGGACAGTAAAGCATTAGCGCCTTATCGACAGTTTTTGCAAAA
AAACTCTGAAGAGAAGGAAGCCAATTATTTTCGGAATTTGATAAAACGAACCTGGCCTGAAGACATAAAAAGAAAGATAA
AACCTGATTCTTTGCTCATATTAATTCCGGCATTTACGGTGAGTCAGTTAACGCAGGCATTTCGGATTGGATTACTTATT
TATCTTCCCTTTCTGGCTATTGACCTGCTTATTTCAAATATACTGCTGGCTATGGGGATGATGATGGTATCGCCAATGAC
CATTTCATTACCGTTTAAGCTGCTAATATTTTTACTGGCAGGCGGTTGGGATCTGACACTGGCGCAATTGGTACAGAGCT
TTTCATGA

Protein sequence : 
MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP
VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI
YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-86 100
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-86 100
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-85 99
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-85 99
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-85 99
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-57 60
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-47 54
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-43 53
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-44 53
escR AAC31528.1 L0049 Virulence LEE Protein 2e-44 53
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-44 53
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-44 53
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-44 53
escR AAK26700.1 EscR Virulence LEE Protein 2e-44 53
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-44 53
escR AAL57527.1 EscR Virulence LEE Protein 2e-44 53
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-44 53
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-44 53
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-43 53
unnamed AAL06354.1 EscR Virulence LEE Protein 7e-45 52
escR AAC38369.1 EscR Virulence LEE Protein 1e-43 52
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 8e-44 52
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-35 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-35 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-35 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-35 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-29 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-29 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-35 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-28 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-28 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 7e-35 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 7e-35 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-35 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-35 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-35 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-35 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-35 42
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 8e-31 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-35 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 5e-30 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 4e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscR NP_456109.1 putative type III secretion protein VFG0519 Protein 6e-86 99
yscR NP_456109.1 putative type III secretion protein VFG0188 Protein 4e-50 55
yscR NP_456109.1 putative type III secretion protein VFG0394 Protein 4e-46 54
yscR NP_456109.1 putative type III secretion protein VFG0827 Protein 1e-44 53
yscR NP_456109.1 putative type III secretion protein VFG0715 Protein 7e-44 52
yscR NP_456109.1 putative type III secretion protein VFG0044 Protein 1e-39 45
yscR NP_456109.1 putative type III secretion protein VFG1259 Protein 4e-31 42