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Name : STY0165 Accession : NP_454757.1 Strain : Salmonella enterica CT18 Genome accession: NC_003198 Putative virulence/resistance : Virulence Product : protein transport protein HofB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 169466 - 170851 bp Length : 1386 bp Strand : - Note : Similar to Escherichia coli protein transport protein HofB of HopB SW:HOFB_ECOLI (P36645; P75649; Q47022) fasta scores: E(): 0, 69.7% id in 459 aa, and to Pseudomonas aeruginosa fimbrial assembly protein PilB SW:PILB_PSEAE (P22608) fasta scores: E(): 0, 3 DNA sequence : ATGAAAGACGCTCAGCTCAACACCTTGTGTCAACGTCATCAGGCTGTACTGATCAATAGCGCCAGCAACAGTATCACTGT TGCGGTGGTCGACGCGCCCTCTCATGCGTTATTGGACGCTCTGCATTTCGCCACGCAAAAACAGATTGATATTGTGTGCT GGACTCGCCAGCAAATGGAAAATCATCGGCATAAGCCGGATCAGGCACCCTCGACAAACGCCGCGAAAGGCGGAGAAACC GCGGCCCAGCTTCTCAATCAGACATTACGCTCGGCGATGGCGAAACGCGCCTCTGATATCCATCTCGAACCCGGCGCCAG CCGCTACCGGATAAGGCTCCGCATCGATGGCGTTCTTCATATTCTGCAGGACATCGCCAAAGAGACGGGGCTTGCGCTGA CGGCCAGATTGAAAGTCCTAGGAAATTTGGACATCGCTGAACATCGGCTGCCGCAGGACGGGCAATTTACCGTTGACCTG ACGGGCGACAGCATCTCTTTTCGTATCGCCACGCTTCCCTGTAAAGAAGGCGAAAAAGTCGTCTTACGGTTGTTGCATCA GGTTGAACAAACGCTGGATCTGGACACGCTGGGCATGTACGGGGCACAACTTACCGCTTTTAGACAAGCCCTACAGCAAC CTCAGGGGCTGGTACTGGTGACTGGCCCCACCGGTAGCGGAAAAACGGTCACGCTATACAGCGCGCTACAAACCCGGAAT ACGCCGGGTATCAACCTCTGTAGCGTTGAGGATCCGATAGAAATTCCACTGGATGGGATTAACCAGACGCAGATCCATCC CCGCGCCGGGCTCACCTTTCAAAATGTGCTGCGCGCGCTTTTACGCCAGGACCCTGACATCATCATGGTAGGTGAAATTC GTGACGGCGACACCGCAGAAATCGCCATTAAGGCGGCACAAACGGGCCATCTGGTACTTTCAACACTCCATACGAACTCC ACCAGCGAAACCCTGATACGTTTGCAGCAAATAGGCGTAACACGCTGGATGATCTCATCGGCGCTTACGCTGGTGGTAGC GCAACGCCTGGTAAGGAAGCTTTGCCCGCACTGCAAACAGCGTCTGAGCGATCCCGTGGTGCTATCGCCCAATCTTTGGC CCAGCGCGCTACCGCGCTGGCAGGCAAACGGCTGTCAGCATTGCTACCACGGCTTTTATGGCCGAACCGCGTTATTCGAA GTGTTAACCGTTACCCCGGCATTACGTCAGTTAATTGCGAGCGGCGCATCGGCGCAAGCACTGGAAGCCCACCTCCAGCA GACCGGTACAGGGACGCTTTTTGAAAATGGCTGTCGCGCCGTTGAGCAAGGCATGACGTCCTTTGAAGAGATACTGCGCG TTCTGGGAATGCCCCATGAGCGTTAA Protein sequence : MKDAQLNTLCQRHQAVLINSASNSITVAVVDAPSHALLDALHFATQKQIDIVCWTRQQMENHRHKPDQAPSTNAAKGGET AAQLLNQTLRSAMAKRASDIHLEPGASRYRIRLRIDGVLHILQDIAKETGLALTARLKVLGNLDIAEHRLPQDGQFTVDL TGDSISFRIATLPCKEGEKVVLRLLHQVEQTLDLDTLGMYGAQLTAFRQALQQPQGLVLVTGPTGSGKTVTLYSALQTRN TPGINLCSVEDPIEIPLDGINQTQIHPRAGLTFQNVLRALLRQDPDIIMVGEIRDGDTAEIAIKAAQTGHLVLSTLHTNS TSETLIRLQQIGVTRWMISSALTLVVAQRLVRKLCPHCKQRLSDPVVLSPNLWPSALPRWQANGCQHCYHGFYGRTALFE VLTVTPALRQLIASGASAQALEAHLQQTGTGTLFENGCRAVEQGMTSFEEILRVLGMPHER |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-69 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-69 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| STY0165 | NP_454757.1 | protein transport protein HofB | VFG2048 | Protein | 5e-71 | 46 |
| STY0165 | NP_454757.1 | protein transport protein HofB | VFG2426 | Protein | 3e-70 | 44 |
| STY0165 | NP_454757.1 | protein transport protein HofB | VFG0182 | Protein | 8e-73 | 44 |
| STY0165 | NP_454757.1 | protein transport protein HofB | VFG1876 | Protein | 5e-74 | 44 |
| STY0165 | NP_454757.1 | protein transport protein HofB | VFG0112 | Protein | 9e-77 | 44 |
