Gene Information

Name : hpcC
Accession : -
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Unknown
Product : 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (pseudogene)
Function : -
COG functional category : -
COG ID : -
EC number : 1.2.1.-
Position : 1099596 - 1101061 bp
Length : 1466 bp
Strand : +
Note : Pseudogene. Similar to Escherichia coli 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase hpcC SW:HPCC_ECOLI (P42269) fasta scores: E(): 0, 96.2% id in 366 aa. This CDS contains a frameshift after codon 97. The sequence has been checked and is

DNA sequence : 
ATGAAGAAAATAAATCATTGGATTAACGGCAAAAACGTTGCAGGTAACGACTACTTCCAGACCACTAACCCGGCGACCGG
TGATGTGCTGGCGGAAGTAGCCTCCGGCGGTGAAGCAGAAGTGAACCAGGCTGTCGCGGCGGCAAAAGAGGCGTTCCCGA
AATGGGCCAACCTGCCGATGAAAGAGCGCGCGCGCCTGATGCGCCGCCTTGGCGACCTGATTGACCAGCATGTGCCGGAA
ATCGCGGCGATGGAAACCGCCGACACCGGCCTGCCTATTCACCAGACTAAAACGTGCTGATCCCGCGCGCCTCGCATAAC
TTCGAATTCTTCGCCGAAGTGTGCCAGCAGATGAACGGCAAGACCTATCCGGTTGACGATAAAATGCTCAATTATACGCT
GGTGCAGCCCGTCGGCGTCTGCGCGCTGGTGTCGCCGTGGAACGTGCCGTTTATGACCGCGACTTGGAAAGTTGCGCCGT
GCCTGGCGCTGGGTAACACCGCGGTGCTCAAAATGTCCGAGCTGTCGCCGCTGACTGCCGACAGGCTGGGCGAGCTGGCA
CTGGAGGCAGGAATTCCGGCAGGCGTGCTGAACGTGGTGCAGGGCTACGGCGCGACGGCGGGCGATGCGCTGGTACGCCA
CCATGACGTGCGTGCGGTGTCGTTTACCGGCGGTACCGCCACCGGTCGCAATATCATGAAAAATGCCGGGCTGAAAAAAT
ACTCGATGGAGCTGGGCGGCAAATCGCCGGTGCTGATTTTTGAAGACGCCGACATTGAGCGCGCGCTGGACGCCGCGCTG
TTCACCATCTTCTCGATCAACGGCGAACGCTGCACCGCTGGGTCGCGCATCTTTATCCAGCAGAGCATTTACCCTGAGTT
CGTGAAGCGCTTTGCCGAACGCGCGAATCGCCTGCGTGTCGGCGATCCGACCGACCCGAACACCCAGGTCGGCGCGCTGA
TTAGCCAACAGCACTGGGAGAAAGTCTCCGGTTATATCCGCCTCGGCATTGAAGAGGGGGCAACGCTGCTGGCGGGCGGT
GCGGAAAAACCCACTGACCTGCCTGCGCATCTGAAAGGCGGTAACTTCCTGCGCCCAACCGTGCTGGCCGATGTCGACAA
CCGTATGCGCGTTGCGCAGGAAGAGATCTTTGGGCCGGTCGCCTGCCTGCTGCCATTCAAAGACGAAGCGGAAGGGTTAC
GTTTGGCGAACGATGTGGAATACGGTCTGGCCTCTTATATCTGGACCCAGGACGTGAGCAAAGTGTTGCGCCTGGCGCGT
GGGATTGAAGCCGGCATGGTCTTCGTCAACACCCAGAACGTCCGCGACCTGCGCCAGCCGTTCGGCGGCGTGAAAGCCTC
CGGTACCGGGCGCGAAGGCGGCGAATATAGCTTCGAAGTGTTTGCGGAAATGAAAAACGTCTGCATCTCAATGGGCGACC
ATCCTATCCCAAAATGGGGAGTTTGA

Protein sequence : 
-

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpaE AAO17179.1 HpaE Not tested tcd island DNA e-214 82.3