Gene Information

Name : hpcR
Accession : NP_455597.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Resistance
Product : homoprotocatechuate degradative operon repressor
Function : -
COG functional category : K : Transcription
COG ID : COG1846
EC number : -
Position : 1097595 - 1098035 bp
Length : 441 bp
Strand : -
Note : Similar to Escherichia coli homoprotocatechuate degradative operon repressor hpcR or hpaR SW:HPCR_ECOLI (Q07095) fasta scores: E(): 0, 80.1% id in 136 aa

DNA sequence :
ATGCATGATTCATTAACCATCGCCTTGCTTCAGGCGCGCGAAGCGGCAATGACCTATTTCCGCCCCATCGTTAAAAGCCA
CAATCTGACCGACCAGCAATGGCGCATTGTGCGAATCCTGGCCGATAGCCCCTCTATGGATTTTCACGAGCTGGCCTTTC
GTACCTGTATTTTGCGTCCAAGTCTGACCGGAATATTGACGCGCATGGAGCGAGACGGACTGGTGTTGCGACTCAAGCCG
GTTAACGATCAGCGTAAGTTATATGTCATGTTGACGGAGCAGGGACAAACGTTGTACGCCCGTGCCCGGAGCGAGGTAGA
AGAGGCTTATCGAAAAATTGAGGCCGATTTCACGCCCGAAAAAACACAGCAATTGATGCTGCTGCTGGACGATCTTATTG
CTCTGGGGCGCCAGCATCCTGATAGCGAAGCGGAAGCATAG

Protein sequence :
MHDSLTIALLQAREAAMTYFRPIVKSHNLTDQQWRIVRILADSPSMDFHELAFRTCILRPSLTGILTRMERDGLVLRLKP
VNDQRKLYVMLTEQGQTLYARARSEVEEAYRKIEADFTPEKTQQLMLLLDDLIALGRQHPDSEAEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpcR AAO17176.1 HpcR Not tested tcd island Protein 5e-43 72

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hpcR NP_455597.1 homoprotocatechuate degradative operon repressor BAC0505 Protein 3e-33 57