Gene Information

Name : copR
Accession : NP_455593.3
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1094093 - 1094839 bp
Length : 747 bp
Strand : -
Note : Fasta hit to TORR_ECOLI (230 aa), 34% identity in 229 aa overlap; Fasta hit to BAER_ECOLI (240 aa), 32% identity in 224 aa overlap; Fasta hit to YLCA_ECOLI (227 aa), 52% identity in 227 aa overlap; Fasta hit to RSTA_ECOLI (242 aa), 34% identity in 228 aa

DNA sequence : 
ATGACAATTATGTCATCTTGTTGGAGATTTACGGATTCGCTAACAAGCCTATGGCATACTGCGTTGATGAAGATTTTATT
GATTGAAGATAACCAGAAAACCATTGAGTGGGTACGTCAGGGACTCACGGAGGCAGGCTATGTGGTTGATTATGCCTGTG
ATGGACGAGACGGATTACACCTAGCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATGCTGCCGGGGCTTGAT
GGATGGCAGGTTTTACGCGCGTTGCGCACTGCATATCAGCCCCCTGTTATTTGCCTGACGGCGCGCGACTCGGTTGAGGA
TCGCGTCAAAGGTCTTGAGGCGGGCGCTAATGATTACCTTGTTAAGCCTTTTTCCTTCGCCGAACTGCTGGCCCGGGTGA
GAGCTCAACTCAGACAGCATGTCCCGGTCTTTACCCGACTGACGATCAATGGTCTGGACATGGATGCCACAAAGCAATCG
GTGTTACGAAATGGCAAACCGATTTCCCTGACCCGCAAAGAATTCCTGCTCCTCTGGTTACTGGCGTCCCGGGCAGGGGA
AATCGTGCCCCGAACCGCGATCGCCAGCGAAGTTTGGGGAATTAACTTTGATAGTGAAACCAACACCGTTGATGTCGCGA
TTCGTCGGCTGCGCGCCAAAGTAGACGATCCATTTGAAAAGAAGCTCATTATGACCGTCCAGGGGATGGGTTATCGATTA
CAGGCGGAAACGTCGCAGAATGGTTAA

Protein sequence : 
MTIMSSCWRFTDSLTSLWHTALMKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLD
GWQVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLTINGLDMDATKQS
VLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVQGMGYRL
QAETSQNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-100 98
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-110 97

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR NP_455593.3 response regulator BAC0083 Protein 4e-55 58
copR NP_455593.3 response regulator BAC0197 Protein 3e-57 58
copR NP_455593.3 response regulator BAC0125 Protein 3e-59 56
copR NP_455593.3 response regulator BAC0638 Protein 2e-51 56
copR NP_455593.3 response regulator BAC0308 Protein 3e-53 54
copR NP_455593.3 response regulator BAC0111 Protein 4e-55 53
copR NP_455593.3 response regulator BAC0347 Protein 2e-48 51
copR NP_455593.3 response regulator NC_003923.1003417.p0 Protein 2e-37 44
copR NP_455593.3 response regulator NC_013450.8614146.p0 Protein 2e-37 44
copR NP_455593.3 response regulator NC_002951.3238224.p0 Protein 2e-37 44
copR NP_455593.3 response regulator NC_007793.3914065.p0 Protein 2e-37 44
copR NP_455593.3 response regulator NC_002758.1121390.p0 Protein 2e-37 44
copR NP_455593.3 response regulator NC_010079.5776364.p0 Protein 2e-37 44
copR NP_455593.3 response regulator NC_002952.2859858.p0 Protein 2e-37 44
copR NP_455593.3 response regulator NC_007622.3794948.p0 Protein 2e-37 44
copR NP_455593.3 response regulator AE015929.1.gene1106. Protein 2e-32 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR NP_455593.3 response regulator VFG0596 Protein 6e-101 98
copR NP_455593.3 response regulator VFG0473 Protein 6e-30 42
copR NP_455593.3 response regulator VFG1389 Protein 2e-30 42