Gene Information

Name : pipA
Accession : NP_455585.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : conserved hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1086003 - 1086683 bp
Length : 681 bp
Strand : -
Note : Similar to Salmonella dublin PipA TR:O85308 (EMBL:AF060858) fasta scores: E(): 0, 96.9% id in 226 aa. Note that the N-terminus of this protein is also weakly similar to Redspotted grouper nervous necrosis virus coat protein TR:Q88165 (EMBL:D38636) (276 aa

DNA sequence : 
ATGCTTCCGGTCACCTACAGATTAATACCTCAAAGCGGAGTATCCACATATGGATTAAATACCGCAGATACACCTGTTTT
CCCCGATATTCCCGAACATGCACCAAACCCCTCACGGCTACGCCTTGCTCATGACAGCCTTGCCATAAACAGTGAATTCC
GTCTGGAGCCAGAGTGTGTGGTGGAGTACCTTATCTCAGGCGCGGGTGGAATAGACCCTGATACAGAAATTGATGACGAC
ACTTATGACGAATGCTACGATGAACTATCCTCCGTACTTCAAAATGCGTATACCCAAAGCGAAACATTCCGCAGACTGAT
GAATTACGCATATGAAAAAGAACTACATGATGTGGAGCAGCGCTGGCTACCGGGGGCAGGCGAAGCCTTTGAAACTACCG
TGGCTCAGGAACACTTCAAACTTTCAGAAGGCAGGAAAGTTATTTGTCTCAATCTGGACGATTCTGATGATTCATATACC
GAACATTATGAAAGTAACGAAGGAAGACAACTTTTTGACACAAAACGTTCATTTACTCATGAAGTTGTACATGCACTGAC
CCATCTTCAGGATAAAGAAGAAAATCATCCAAGAGGCCCTGTTGTCGAATATACCAACATTATTCTGAAAGAGATGGGGC
ATCCTTCACCTCCCAGAATGGTCTACATCTTCAATAAATAG

Protein sequence : 
MLPVTYRLIPQSGVSTYGLNTADTPVFPDIPEHAPNPSRLRLAHDSLAINSEFRLEPECVVEYLISGAGGIDPDTEIDDD
TYDECYDELSSVLQNAYTQSETFRRLMNYAYEKELHDVEQRWLPGAGEAFETTVAQEHFKLSEGRKVICLNLDDSDDSYT
EHYESNEGRQLFDTKRSFTHEVVHALTHLQDKEENHPRGPVVEYTNIILKEMGHPSPPRMVYIFNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pipA NP_455585.1 conserved hypothetical protein Virulence SPI-5 Protein 3e-94 100
pipA NP_460060.1 pathogenicity island-encoded protein A Virulence SPI-5 Protein 5e-92 99
pipA YP_216026.1 pathogenicity island encoded protein: SPI3 Virulence SPI-5 Protein 4e-91 98
pipA AAC33726.1 PipA Virulence SPI-5 Protein 2e-91 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pipA NP_455585.1 conserved hypothetical protein VFG0588 Protein 2e-92 99