Gene Information

Name : ribD (STM0416)
Accession : NP_459411.1
Strain : Salmonella enterica LT2
Genome accession: NC_003197
Putative virulence/resistance : Unknown
Product : bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0117
EC number : 1.1.1.193
Position : 469844 - 470947 bp
Length : 1104 bp
Strand : +
Note : 'riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine

DNA sequence :
ATGCAGGATGAGTTTTACATGGCGCGAGCGCTCAAACTGGCGCAGCGTGGACGTTTCACCACTCACCCTAACCCTAATGT
CGGCTGTGTCATTGTTAACAATGGCGACATCGTCGGCGAAGGTTATCACCATCGCGCCGGAGAGCCGCACGCCGAGGTTC
ATGCGCTGCGGATGGCGGGCGCAAAAGCCAAAGGCGCAACCGCCTATGTCACGCTTGAACCCTGTAGCCATCATGGGCGA
ACGCCGCCATGTTGCGATGCGCTGATTGCGGCCGGCGTCGCGCGCGTGGTCGCCGCGATGCAGGACCCGAACCCACAGGT
CGCCGGGCGTGGGCTGTATCGCCTGCAACAGGCGGGTATTGCGGTCAGCCACGGGTTAATGATGAGTGAAGCGGAGGCGC
TCAATAAAGGCTTCCTCAAGCGGATGCGTACCGGATTCCCTTATCTTCAGCTTAAACTGGGCGCCTCCGTCGACGGACGG
ACGGCGATGGCCAGCGGCGAAAGCCAGTGGATCACCTCGCCGCAGGCCCGGCGTGACGTTCAGCGCTTGCGTGCGCAAAG
CCACGCTATCTTAACCAGTAGCGCGACGGTATTGGCTGACGATCCGGCCTTGACGGTGCGTTGGGCGGAGTTAGACGCCT
CTACGCAGGCGTCTTACCCGCAGGAAAATCTGCGCCAGCCGGTGCGAATTGTTATCGACAGCCAAAACCGGGTAACGCCT
GCGCATCGTATTGTGCAGCAGCCTGGCGAAACGTGGATCGCGCGTACCCAGGAAGATAGCCGCGCGTGGCCCGATGCGGT
TCGTACTATCAGCGTGCCGGCGCACAACGGACATTTGGATCTGGTTGTGCTGATGATGCAGTTAGGCAGGCAGCAGATTA
ATAGCATATGGGTTGAAGCCGGACCGGGACTGGCGGGCGCGTTGCTGCAAGCCGGGCTGGTGGATGAACTGATTGTCTAT
GTCGCGCCTAAATTGTTGGGAACCCAGGCGCGGGGATTATGCGAATTGCCGGGGCTTGAGAAGCTCGCCGACGCGCCGCA
ATTTACCTTCAGCGAAATACGTCATGTCGGCCCGGATGTTTGCCTGCATATGGTGAGCGCATGA

Protein sequence :
MQDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAKAKGATAYVTLEPCSHHGR
TPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGR
TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTP
AHRIVQQPGETWIARTQEDSRAWPDAVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVY
VAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDVCLHMVSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 3e-57 45
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 3e-57 45