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Name : lpfC (STM3638) Accession : NP_462539.1 Strain : Salmonella enterica LT2 Genome accession: NC_003197 Putative virulence/resistance : Virulence Product : long polar fimbrial outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3824115 - 3826643 bp Length : 2529 bp Strand : - Note : outer membrane usher protein LpfC precursor (SW:LPFC_SALTY) DNA sequence : ATGACATGGACGCATCTTCCTCTGGGCAATAAGACCTCGCGTTTCACGCAGTCTGCGCTTGCGCTGATGATAGCGGGTAC GCTCCCCGCGTATGCGGGAACATTTAACCCGCGCTTTCTGGAGGATGTGCCGGGTATTGATCAGCACGTTGACCTTTCAA TGTATGAATCCAATAAAGCTGAACACCTGCCAGGTAAATACCGCGTCTCGGTGGTGGTCAACGAAAAAAAAATGGAGTCT CGCACCCTGGAGTTTAAGGCAGCGACAGAGGCGCAGCGCGCAAAAATGGGTGAATCCCTGGTGCCGTGCTTAAGCCGCGT GCAGCTTGAAGATATGGGCGTGCGTATTGATAGCTTCCCGGCGCTGAAAATGGCCCCGCCTGAAGCCTGTGTTGCTTTTG ACGACATTATTCCCCAGGCCGCCAGCCATTTCGACTTTGCAGACCAGACCCTGATCATGAGCTTCCCGCAGGCTGCGATG AAGCAGACAGCGCGCGGTACGGTGCCAGAATCGCAGTGGGACGAAGGGGTGAATGCCCTGCTGGTGGATTATAACTTTTC CGGCAGCAACGCCAGCTATGACGCACACGACAGTGAAACCAGCTACAACAGCGACAGCTACTATCTGAATCTGCGCAGCG GTATGAACCTGGGGGCATGGCGGTTACGTAACTATAGCACCTGGACGCGAAACGACGGTAACAACACATGGGATAACATT GGCACATCCTTAAGCCGTGCCATTGTACCGCTGAAATCACAGCTGACGTTGGGGGATACCTCCACTGCCGGTGATATTTT TGACAGCGTTCAGATGCGCGGTGTGCAGTTAACTTCCGACGAAGAGATGCTGCCTGACAGCCAGCGCGGGTTTGCGCCCG TCATCCGGGGTATTGCCAAAAGTAACGCCGAAGTTACCGTTGAGCAGAACAACTACGTTATTTACCGTACGTTTGTTCAG CCGGGTGCGTTTGAAATTAACGACCTGTATCCAACCTCAAACAGCGGCGACCTGACGGTCACCATTAAAGAATCGGACGG CAGTGAGCAGAAGTTCGTTCAGCCGTTCTCCTCGGTGGCGCTCCTCCAGCGTGAAGGCCATCTCAAATACAGCCTTTCCG CCGGGGAATACCGTGCCGGGAACTATAACAGCGCCGAGCCGAAATTCGGGCAGCTTGATGCCATGTACGGCCTGCCGTAT GGCTTTACCGTTTACGGTGGTGCGATCTTCTCTGACGACTATTACTCGCTGGCGGGAGGATTAGGTAAAAACTTCGGTTA TATCGGCGCGATCTCCATCGATGTAACCCAGGCAAAAAGCAAGCTGGCAAATGAGGAGAATTCGGAAGGTCAGTCTTATC GTTTCCTCTACTCCAAGAGCTTTAACAGCGGTACAGATTTCCGTCTGCTGGGTTACAAGTATTCGACCAGCGGCTATTAC ACCTTCCAGGAAGCGACGGATGTGCGCAGCGATGCGGACAGCTCTTATAGCCAGTACCACAAACGTAGTCAGATTCAGGG CAACGTGACGCAGCAACTGGGCGCCTGGGGCTCGGTCTATTTTAACGTCACGCAGCAGGACTACTGGAACGATGAAGGTA AACAGCGTTCGCTGAATGCCGGTTATAACGGCCGTATTGGCCGCGTGAACTACAGCGTTGCTTACACCTGGACGAAAAGC CCGGAGTGGGATGAGAGCGATCGTTTACTGTCATTCTCCATGTCGATTCCACTGGGACGCGTGTGGAGTAACTACCACCT CACGACCGATCAGCATGGCCGAACCAACCAGCAGTTAGGGGTGAGCGGCACCGCGCTGGAAGACCACAACCTGAACTATA GTGTGCAGGAAGGCTACGGCAGCAACGGCGTGGGTAACAGCGGCAGCGTGAACCTGGATTACCAGGGCGGCGTGGGTAGC GCCAGCCTGGGTTACAACTACAACCGTGACGGCCAGCAGGTGAACTACGGTTTGCGCGGCGGTGTGATAGCCCATAGCGA AGGTATCACTCTTTCTCAACCGCTGGGTGAATCCATGGCCATTATCTCCGCGCCGGGCGCGCGCGGCGCGCACGTGATCA ACAACGGTGGTGTGGAAGTGGACTGGATGGGTAATGCGGTCGTACCTTACCTTACTCCGTACCGTGAAACGGAAGTCTCA CTGCGAAGCGACAGCCTGAACAACCAGGTTGACCTGGATACCGCCTCCGTCAACGTAGTGCCGACACGCGGCGCGATTGT TCGTGCCCGCTTCGATACCCGAGTGGGCTATCGTGTGCTGATGAATCTGACGCAGGCCAATGGCAAAGCGGTGCCGTTTG GTGCTACCGCCACGCTGCTGGATACCACAAAAGAGTCCAGCAGCATTGTGGGTGAAGACGGTCAGCTTTATATCAGCGGG ATGCCGGAGAAAGGTGCCCTTCAGGTGAACTGGGGTAAAGACCAGGCACAGCAATGCCGCGTGGCGTTTACGCTGCCGGA ACAACAGGATAATACCGGCGTGGTGATGGCGAATGCCGTCTGCCGGTAA Protein sequence : MTWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMES RTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAM KQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNTWDNI GTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQ PGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPKFGQLDAMYGLPY GFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYY TFQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTKS PEWDESDRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGS ASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVS LRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTTKESSSIVGEDGQLYISG MPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 7e-166 | 45 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 9e-168 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lpfC | NP_462539.1 | long polar fimbrial outer membrane usher protein | VFG0454 | Protein | 0.0 | 100 |
| lpfC | NP_462539.1 | long polar fimbrial outer membrane usher protein | VFG0876 | Protein | 2e-168 | 45 |
| lpfC | NP_462539.1 | long polar fimbrial outer membrane usher protein | VFG1645 | Protein | 5e-168 | 41 |
| lpfC | NP_462539.1 | long polar fimbrial outer membrane usher protein | VFG0446 | Protein | 1e-153 | 41 |
| lpfC | NP_462539.1 | long polar fimbrial outer membrane usher protein | VFG0912 | Protein | 3e-167 | 41 |
