Gene Information

Name : sitD (STM2864)
Accession : NP_461785.1
Strain : Salmonella enterica LT2
Genome accession: NC_003197
Putative virulence/resistance : Virulence
Product : permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3008951 - 3009799 bp
Length : 849 bp
Strand : +
Note : SitD (gi|5231097); Salmonella iron transporter; Fur-regulated

DNA sequence : 
ATGTTCTTAACAACGTTACTGGAACCCTTTCAGTTTGATTTTATGGTGAACGCCCTTATGGTTTCGGTCATTGTGGCGAT
TCCCTGCGCCTTACTGTCCGTGTTTTTAGTGTTAAAAGGCTGGGCGTTAATGGGCGATGCAATGAGTCATGCGGTATTCC
CCGGGGTCGTGCTGGCATATATTGTGGGGATCCCCCTGGCGATTGGCGCTTTCATTGCCGGATTATTTTGCGCTATCGCC
ACCGGCTATCTGGACGATAACAGCCGCATCAAACGTGATACGGTGATGGGCATCGTCTTTTCCGGGATGTTTGGCGCAGG
TCTGGTGCTCTATGTTTCTATTCAATCGGAAGTGCATCTGGATCACATCCTGTTTGGGGATATGCTGGGCGTATCGCTGG
GGGATATCGTACAAACGTCAGTTATTGCACTGGGTATTGCGTTAATCATAGGGCTGAAATGGAAAGATCTCCTGCTACAC
GCTTTTGACCCGCACCAGGCGAAAGCCAGCGGGCTGAATACCACACTACTGCATTATGGCCTGCTATGTATGATTGCGCT
GACTATCGTCGCCACGCTGAAATCGGTGGGCATTATTCTGTCAATCTCACTGCTTATCGCCCCCGGCGCAATTGCCATTT
TGCTGACGCGACGCTTTGCGCGCGCGCTGGGATTAGCGGTGAGTCTGTCAGTTATTACCGCTTTTGCGGGCGTTTATCTG
TCTTTTTATCTTGATAGCGCGCCAGCGCCGACCATCGTGGTATTATTTGCCATCGTGTTTATTGCGGCATTTATTTACGC
AACATGGCGCGACAGGCGTAATGAAATCGTACCAGAGGCGCAAGGTTAA

Protein sequence : 
MFLTTLLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIVGIPLAIGAFIAGLFCAIA
TGYLDDNSRIKRDTVMGIVFSGMFGAGLVLYVSIQSEVHLDHILFGDMLGVSLGDIVQTSVIALGIALIIGLKWKDLLLH
AFDPHQAKASGLNTTLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFARALGLAVSLSVITAFAGVYL
SFYLDSAPAPTIVVLFAIVFIAAFIYATWRDRRNEIVPEAQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-104 100
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-104 100
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-104 99
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-104 99
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-104 99
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 7e-34 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-33 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-33 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-34 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD NP_461785.1 permease BAC0352 Protein 7e-105 100
sitD NP_461785.1 permease BAC0442 Protein 5e-55 54
sitD NP_461785.1 permease BAC0441 Protein 7e-34 43
sitD NP_461785.1 permease BAC0351 Protein 5e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD NP_461785.1 permease VFG0528 Protein 6e-105 100
sitD NP_461785.1 permease VFG0527 Protein 4e-34 41