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Name : ssaS (STM1420) Accession : NP_460385.1 Strain : Salmonella enterica LT2 Genome accession: NC_003197 Putative virulence/resistance : Virulence Product : type III secretion system apparatus protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4794 EC number : - Position : 1499388 - 1499654 bp Length : 267 bp Strand : + Note : secretion system apparatus protein SsaS (SW:SSAS_SALTY); similar to YscS of the secretion system of Yersinia DNA sequence : ATGAATGATTCTGAATTGACGCAATTTGTAACGCAACTTTTATGGATCGTCCTTTTTACGTCTATGCCGGTAGTGTTGGT GGCATCGGTAGTTGGTGTCATCGTAAGCCTTGTTCAGGCCTTGACTCAAATACAGGACCAAACGCTACAGTTCATGATTA AATTATTGGCAATTGCAATAACCTTAATGGTCAGCTACCCATGGCTTAGCGGTATCCTGTTGAATTATACCCGGCAGATA ATGTTACGAATTGGAGAGCATGGTTGA Protein sequence : MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI MLRIGEHG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ssaS | CAA68200.1 | secretion system apparatus, SsaS | Virulence | SPI-2 | Protein | 4e-27 | 100 |
| ssaS | YP_216428.1 | secretion system apparatus protein SsaS | Virulence | SPI-2 | Protein | 6e-27 | 100 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | Virulence | SPI-2 | Protein | 6e-27 | 100 |
| ssaS | NP_456108.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 7e-27 | 99 |
| ssaS | NP_805091.1 | type III secretion protein | Virulence | SPI-2 | Protein | 7e-27 | 99 |
| hrcS | AAB06006.1 | HrcS | Virulence | Hrp PAI | Protein | 7e-04 | 48 |
| lscS | AAO18039.1 | LscS | Virulence | TTSS locus | Protein | 3e-10 | 47 |
| escS | AFO66341.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-08 | 47 |
| escS | AFO66401.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-08 | 47 |
| escS | AAK26701.1 | EscS | Virulence | LEE | Protein | 3e-07 | 45 |
| escS | YP_003223489.1 | T3SS structure protein EscS | Virulence | LEE | Protein | 4e-07 | 45 |
| escS | AAL57528.1 | EscS | Virulence | LEE | Protein | 3e-07 | 45 |
| escS | YP_003232139.1 | T3SS structure protein EscS | Virulence | LEE | Protein | 4e-07 | 45 |
| escS | CAC81848.1 | EscS protein | Virulence | LEE II | Protein | 3e-07 | 45 |
| escS | CAI43888.1 | EscS protein | Virulence | LEE | Protein | 3e-07 | 44 |
| hrcS | AAT96263.1 | HrcS | Virulence | S-PAI | Protein | 0.042 | 44 |
| hrcS | AAT96304.1 | HrcS | Virulence | S-PAI | Protein | 0.042 | 44 |
| hrcS | AAT96344.1 | HrcS | Virulence | S-PAI | Protein | 0.042 | 44 |
| hrcS | ABA47280.1 | HrcS | Virulence | S-PAI | Protein | 0.010 | 44 |
| escS | NP_290282.1 | hypothetical protein | Virulence | LEE | Protein | 7e-07 | 43 |
| unnamed | AAL06355.1 | EscS | Virulence | LEE | Protein | 3e-07 | 43 |
| ECs4582 | NP_312609.1 | EscS | Virulence | LEE | Protein | 7e-07 | 43 |
| escS | AAC38370.1 | EscS | Virulence | LEE | Protein | 5e-07 | 43 |
| escS | AAC31527.1 | L0048 | Virulence | LEE | Protein | 5e-07 | 43 |
| escS | ACU09472.1 | hypothetical protein | Not tested | LEE | Protein | 5e-07 | 43 |
| escS | YP_003236102.1 | T3SS structure protein EscS | Virulence | LEE | Protein | 7e-07 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | VFG0520 | Protein | 2e-27 | 100 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | VFG0395 | Protein | 1e-11 | 52 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | VFG0187 | Protein | 2e-05 | 46 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | VFG0043 | Protein | 2e-06 | 44 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | VFG0716 | Protein | 2e-07 | 43 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | VFG0826 | Protein | 2e-07 | 43 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | VFG2132 | Protein | 9e-05 | 43 |
