|
Name : clpC1 (SAV_2600) Accession : NP_823776.1 Strain : Streptomyces avermitilis MA-4680 Genome accession: NC_003155 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3194289 - 3196817 bp Length : 2529 bp Strand : + Note : PF07724: ATPase family associated with various cellular activities (AAA) DNA sequence : ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGCGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCCAAGGCCCTGGAGAGCCTCGGGA TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGTCCGGGCACATCCCCTTC ACTCCCCGTGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGCCACAACTACATCGGCACGGAGCA CATCCTGCTCGGCCTGATCCGTGAGGGCGAGGGTGTCGCCGCCCAGGTCCTGGTCAAGCTGGGCGCAGACCTCAACCGGG TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGTTACCACCAGGGCAAGGAGAGCACCGTCGAGGGCGGTCCTGCCGAGGGC ACCCCCTCCACGTCCCTGGTCCTCGACCAGTTCGGCCGGAATCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGT CATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGTACGAAGAACAACCCGGTCCTGATCGGTG AGCCCGGTGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCTCAGGCGATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAG GACAAGCACCTCTACACCCTGGACCTGGGTGCGCTGGTCGCCGGTTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAA GAAGGTGCTGAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTCGTCGGTGCGGGTG CCGCCGAGGGCGCCATCGACGCGGCTTCGATCCTGAAGCCGATGCTGGCCCGCGGTGAGCTGCAGACCATCGGCGCCACC ACACTCGACGAGTACAAGAAGTATCTGGAGAAGGACGCGGCTCTCGAGCGGCGTTTCCAGCCGATCCAGGTGGCGGAGCC TTCCCTCCCCCACACGATCGAGATCCTCAAGGGCCTGCGGGACCGTTACGAGGCACACCACCGTGTCTCCATCACGGACG AGGCCCTGGTGCAGGCGGCGACGCTCGCCGACCGCTACGTCTCGGACCGCTTCCTCCCGGACAAGGCGATCGACCTGATC GACGAGGCGGGTTCCCGGATGCGGATCCGCCGGATGACCGCGCCGCCGGACCTGCGCGAGTTCGACGAGAAGATCGCGGG CGTGCGCCACGACAAGGAGTCCGCGATCGACTCGCAGGACTTCGAGAAAGCCGCCTCCCTTCGCGACAAGGAGAAGCAGC TCCTGGCCGCGAAGGCCAAGCGGGAGAAGGAGTGGAAGACCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTG ATCGCCGAAGTTCTGGCCGCGTCGACGGGCATTCCCGTCTTCAAGCTCACAGAAGAGGAGTCGAGTCGTCTCCTGCGCAT GGAGGACGAGCTCCACAAGCGGGTCATCGGCCAGAAGGACGCCGTCAAGGCGCTGTCGAAGGCGATCCGTCGTACGCGTG CGGGTCTGAAGGACCCGAAGCGTCCGGGTGGTTCGTTCATCTTCGCGGGCCCGTCCGGTGTCGGTAAGACCGAGCTGTCG AGGGCCCTGGCGGAGTTCCTGTTCGGTGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACAC GGTCTCGCGTCTGTTCGGTTCGCCTCCCGGTTACGTGGGCTACGAAGAGGGCGGGCAGCTGACCGAGAAGGTCCGCCGCA AGCCGTTCTCCGTGGTCCTGTTCGACGAGGTCGAGAAGGCCCACGCGGACATCTTCAACTCGCTGCTGCAGATCCTGGAG GACGGTCGGCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGCAC CCGGGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCCAGGGCGACTCCAAGTCCACCTACGAGCGCATGAAGAACA AGGTCGCGGACGAGCTCAAACGGCACTTCCGCCCCGAGTTCCTCAACCGCGTCGACGACGTGGTCGTCTTCCCGCAACTG ACGCGGGACGACATCCTCGCGATCGTCGACCTGATGATCACCAAGGTCGACGAGCGCCTCAAGGACCGGGACATGGGCAT CGAACTCGCCCAGTCCGCGAAGGAACTGCTCGCGCAGAAGGGCTACGACCCCATGCTCGGGGCGCGGCCGCTGCGCCGCA CGATCCAGCGCGAGATCGAGGACACCCTCTCCGAGAAGATCCTCTTCGGGGAGCTGCGTCCGGGCCACATCGTGGTCGTC GACACGGAGGGCGAGGGCGAGACCAAGACCTTCACCTTCCGCGGCGAGGAGAAGTCGGCCCTGCCCGACGTCCCCCCGAT CGAACAGGCAACAGGAGGTGACCGGCCGGGCTCGGGTACGGAGTCCTGA Protein sequence : MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYHQGKESTVEGGPAEG TPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLK DKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT TLDEYKKYLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYVSDRFLPDKAIDLI DEAGSRMRIRRMTAPPDLREFDEKIAGVRHDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKTGDMDVVAEVDGEL IAEVLAASTGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELS RALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHADIFNSLLQILE DGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDSKSTYERMKNKVADELKRHFRPEFLNRVDDVVVFPQL TRDDILAIVDLMITKVDERLKDRDMGIELAQSAKELLAQKGYDPMLGARPLRRTIQREIEDTLSEKILFGELRPGHIVVV DTEGEGETKTFTFRGEEKSALPDVPPIEQATGGDRPGSGTES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 75 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 5e-94 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC1 | NP_823776.1 | ATP-dependent Clp protease | VFG0079 | Protein | 0.0 | 61 |
| clpC1 | NP_823776.1 | ATP-dependent Clp protease | VFG0080 | Protein | 4e-153 | 52 |
