Gene Information

Name : yscL (YPCD1.61)
Accession : NP_395195.1
Strain :
Genome accession: NC_003131
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1317
EC number : -
Position : 43796 - 44461 bp
Length : 666 bp
Strand : +
Note : type III secretion apparatus component

DNA sequence : 
ATGTCACAAACTTGTCAAACAGGTTACGCCTACATGCAGCCATTTGTTCAAATAATACCAAGTAATCTCTCGCTCGCTTG
CGGTCTGCGTATTTTGCGCGCCGAAGATTACCAATCCAGTTTAACAACCGAAGAGTTGATTAGTGCCGCAAAACAGGATG
CTGAAAAGATCCTGGCTGACGCCCAAGAGGTTTATGAGCAACAAAAGCAGTTAGGATGGCAGGCTGGCATGGATGAGGCG
CGTACCTTACAGGCGACTTTGATTCATGAAACACAGTTACAATGTCAGCAATTTTATCGCCACGTCGAACAACAGATGAG
TGAAGTTGTACTTTTGGCGGTACGTAAAATCCTCAATGACTATGATCAAGTGGCTATGACACTGCAAGTTGTGCGGGAGG
CTTTAGCCTTGGTGAGTAATCAGAAGCAAGTCGTGGTCAGGGTCAACCCTGATCAGGCAGGAGCTATTCGTGAACAAATA
GCTAAAGTACATAAAGACTTCCCGGAAATAAGCTATTTAGAGGTGACTGCCGATGCGCGTTTGGATCAAGGGGGCTGTAT
ATTAGAGACTGAGGTAGGTATTATTGACGCGAGTATTGATGGGCAAATTGAAGCACTTTCTCGGGCAATATCTACCACTT
TAGGACAAATGAAAGTTACAGAATAG

Protein sequence : 
MSQTCQTGYAYMQPFVQIIPSNLSLACGLRILRAEDYQSSLTTEELISAAKQDAEKILADAQEVYEQQKQLGWQAGMDEA
RTLQATLIHETQLQCQQFYRHVEQQMSEVVLLAVRKILNDYDQVAMTLQVVREALALVSNQKQVVVRVNPDQAGAIREQI
AKVHKDFPEISYLEVTADARLDQGGCILETEVGIIDASIDGQIEALSRAISTTLGQMKVTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAO18079.1 LscL Not tested TTSS locus Protein 1e-65 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscL NP_395195.1 type III secretion system protein VFG0411 Protein 7e-100 100
yscL NP_395195.1 type III secretion system protein VFG0220 Protein 3e-57 57