Gene Information

Name : yscF (YPCD1.55)
Accession : NP_395189.1
Strain :
Genome accession: NC_003131
Putative virulence/resistance : Virulence
Product : needle complex major subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 41026 - 41289 bp
Length : 264 bp
Strand : +
Note : type III secretion apparatus component

DNA sequence : 
ATGAGTAACTTCTCTGGATTTACGAAAGGAACCGATATCGCAGACTTAGATGCGGTGGCTCAAACGCTCAAGAAGCCAGC
AGACGATGCAAACAAAGCGGTTAATGACTCGATAGCAGCATTGAAAGATAAGCCTGACAACCCGGCGCTACTTGCTGACT
TACAACATTCAATTAATAAATGGTCGGTAATTTACAATATAAACTCAACCATAGTTCGTAGCATGAAAGACTTAATGCAA
GGCATCCTACAGAAGTTCCCATAA

Protein sequence : 
MSNFSGFTKGTDIADLDAVAQTLKKPADDANKAVNDSIAALKDKPDNPALLADLQHSINKWSVIYNINSTIVRSMKDLMQ
GILQKFP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscF AAO18031.1 LscF Virulence TTSS locus Protein 1e-23 75

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscF NP_395189.1 needle complex major subunit VFG0405 Protein 5e-35 100
yscF NP_395189.1 needle complex major subunit VFG0214 Protein 2e-19 69