Gene Information

Name : yscD (YPCD1.53)
Accession : NP_395187.1
Strain :
Genome accession: NC_003131
Putative virulence/resistance : Virulence
Product : virulence protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 39569 - 40828 bp
Length : 1260 bp
Strand : +
Note : type III secretion apparatus component

DNA sequence : 
GTGAGTTGGGTCTGTCGTTTTTATCAAGGGAAGCACCGTGGTGTTGAAGTTGAGCTTCCTCATGGGCGCTGTGTTTTTGG
TTCAGACCCGTTGCAGTCAGATATTGTTCTTTCTGACAGCGAAATAGCACCCGTGCATTTAGTGCTGATGGTCGATGAAG
AAGGTATTCGCCTAACTGATTCTGCAGAACCTCTACTACAAGAAGGGCTTCCCGTGCCGTTGGGGACTCTTCTTCGCGCG
GGCTCTTGTCTGGAAGTAGGTTTTTTACTGTGGACATTTGTCGCCGTAGGGCAACCTTTGCCAGAGACGTTACAGGTTCC
CACGCAGAGAAAAGAGCCAACCGACAGGTTACCTCGTTCACGACTTGGGATTGGGCTTGGAGTTCTTTCTTTATTGTTGC
TTTTGACTTTTTTGGGGCTGCTAGGGCACGGATTGTGGCGCGAGTATAACCAGGATGGACAACTTGTTGAGCAAGAAGTA
CGGCGCTTGCTGGCAACTGCTGCTTACAAGGATGTCGTTTTAACATCGCCCAAAAAAGAGGGTGAACCTTGGTTATTAAC
TGGTTATATCCAGGATAATCATGCCCGCTTGTCACTGCAAAATTTTCTTGAGAGCCATGGCATTCCATTCCGGCTTGAAC
TGCGCAGCATGGAAGAACTGCGTCAGGGGGCAGAATTCATCCTGCAACGGTTGGGATACCATGGAATTGAGGTTTCTTTA
GCACCGCAAGCGGGATGGCTACAATTGAATGGGGAAGTGTCAGAGGAAATACAAAAGCAAAAAATTGATAGCCTGCTGCA
AGCTGAAGTGCCAGGGCTGCTCGGTGTAGAAAGTAAAGTGCGGATTGCCGGTAATCAACGCAAGCGGCTTGATGCATTAC
TTGAACAATTTGGTCTGGATTCAGATTTCACTGTAAATGTTAAAGGTGAGCTGATTGAATTACGCGGGCAAGTCAATGAT
GAAAAATTGAATTCATTTAATCAACTACAACAAACTTTTCGCCAAGAGTTTGGCAATCGACCTAAATTAGAACTGGTCAA
TGTCGGGGGGCAACCCCAGCATGATGAATTGAATTTCGAGGTGCAAGCTATCTCGTTAGGGAAAGTGCCTTATGTGGTAC
TCGACAATCATCAACGCTATCCAGAAGGTGCCATACTTAACAATGGCGTTCGTATTCTGGCTATTCGACGCGATGCGGTG
ATTGTGAGTAAAGGAAAACGGGAATTTGTGATCCAACTCAATGGAGGTAAACCTCGATGA

Protein sequence : 
MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRA
GSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEV
RRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSL
APQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVND
EKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAV
IVSKGKREFVIQLNGGKPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscD AAO18032.1 LscD Virulence TTSS locus Protein 4e-82 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscD NP_395187.1 virulence protein VFG0403 Protein 0.0 100
yscD NP_395187.1 virulence protein VFG0212 Protein 4e-75 43