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Name : yscC (YPCD1.52) Accession : NP_395186.1 Strain : Genome accession: NC_003131 Putative virulence/resistance : Virulence Product : outer membrane secretin precursor Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 37749 - 39572 bp Length : 1824 bp Strand : + Note : forms ring-shaped structure in outer membrane DNA sequence : ATGGCTTTTCCGCTACATTCTTTTTTCAAGCGCGTACTCACCGGGACGTTACTGTTACTTTCTAACTATAGCTGGGCGCA AGAACTTGATTGGTTGCCTATACCTTATGTTTATGTGGCGAAGGGGGAAAGTTTACGCGATTTATTAATTGATTTCAGCG CTAATTATGATGCTACAGTGGTAGTAAGCGATAAGATTAATGACAAAGTTTCCGGCCAGTTTGAGCATGATAACCCTCAG GATTTCCTACAGCATATTGCCTCCCTTTACAATTTGGTTTGGTACTATGATGGCAATGTGCTCTACATTTTTAAAAATAG TGAGGTAGCGTCTCGTCTCATTCGTTTACAGGAAAGTGAGGCCGCAGAGTTAAAGCTGGCATTACAACGTTCTGGTATAT GGGAGCCTCGTTTTGGCTGGCGCCCTGATGCTAGCAACCGCCTTGTTTACGTCTCTGGTCCTCCTCGTTATCTTGAATTG GTTGAACAGACCGCAGCCGCATTGGAACAACAGACGCAAATTCGCAGTGAAAAAACAGGGGCATTAGCGATTGAGATTTT CCCTCTCAAATATGCATCAGCGAGCGATCGAACTATTCATTACCGTGATGACGAAGTGGCTGCTCCTGGGGTTGCAACGA TACTTCAACGCGTGTTAAGCGATGCCACAATCCAACAAGTGACAGTGGATAATCAGAGAATACCGCAGGCCGCTACCCGG GCTTCAGCTCAAGCCAAGGTTGAAGCGGATCCATCGCTCAATGCGATAATAGTGCGCGATTCTCCTGAGCGTATGCCAAT GTATCAACGGTTAATTCATGCGCTTGATAAACCTAGCGCTCGTATTGAAGTGGCGTTATCCATTGTCGATATAAATGCCG ACCAACTTACTGAATTAGGTGTGGACTGGCGAGTTGGCATTCGTACTGGCAACAATCATCAGGTGGTAATAAAAACAACC GGGGATCAAAGTAACATCGCTTCAAACGGTGCATTGGGTAGTTTGATTGATGCTCGCGGGCTTGACTACCTATTAGCAAG AGTCAATTTACTTGAAAATGAAGGTTCGGCTCAAGTTGTTTCACGTCCGACCCTGCTAACACAAGAAAATGCCCAAGCGG TGATTGATCACCATGAAACCTATTACGTCAAAGTGACAGGTAAAGAAGTGGCTGAACTGAAAGGGATCACCTACGGCACT ATGCTGCGTATGACACCAAGGGTGCTGACTCAAGGAGATAAGTCAGAAATCAGTCTCAATCTACACATTGAGGATGGGAA CCAAAAACCGAATAGTTCAGGGATTGACGGAATCCCCACTATCAGTCGTACGGTCGTTGATACTGTCGCTCGCGTGGGAC ATGGCCAGAGTTTGATTATTGGTGGTATTTATCGTGACGAATTGAGTGTTGCTCTTAGTAAGGTGCCTTTGCTTGGTGAT ATTCCTTATCTTGGCGCACTTTTCCGCCGTAAAAGTGAGTTAACTCGCCGTACGGTACGGCTGTTTATCATCGAACCACG GATTATTGACGAAGGTATTGCGCATCATTTAGCGTTAGGTAATGGTCGGGATCTACGTACTGGTATCTTAGCTGTTGATG AAATATCTAATCAAAGCACTACCTTGAATAAGTTATTAGGTGGCTTCCAGTGTCAGCCTTTAAACAAAGCGCAAGAAGTG CAGAAATGGCTGAGTCAAAACAATAAATCATCCTATCTTACTCAGTGCAAGATGGACAAAAGTTTGGGATGGCGCGTGGT TGAAGGTGCTTGTACTCCCGCGGAATCATGGTGTGTTTCAGCGCCTAAGCGTGGCGTATTGTGA Protein sequence : MAFPLHSFFKRVLTGTLLLLSNYSWAQELDWLPIPYVYVAKGESLRDLLIDFSANYDATVVVSDKINDKVSGQFEHDNPQ DFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKLALQRSGIWEPRFGWRPDASNRLVYVSGPPRYLEL VEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQAATR ASAQAKVEADPSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTT GDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHHETYYVKVTGKEVAELKGITYGT MLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGD IPYLGALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLALGNGRDLRTGILAVDEISNQSTTLNKLLGGFQCQPLNKAQEV QKWLSQNNKSSYLTQCKMDKSLGWRVVEGACTPAESWCVSAPKRGVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscC | AAO18033.1 | LscC | Virulence | TTSS locus | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscC | NP_395186.1 | outer membrane secretin precursor | VFG0402 | Protein | 0.0 | 100 |
| yscC | NP_395186.1 | outer membrane secretin precursor | VFG0211 | Protein | 0.0 | 64 |
