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Name : yscS (YPCD1.45) Accession : NP_395179.1 Strain : Genome accession: NC_003131 Putative virulence/resistance : Virulence Product : needle complex export protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4794 EC number : - Position : 32905 - 33171 bp Length : 267 bp Strand : + Note : type III secretion apparatus component DNA sequence : ATGAGTCAAGGTGACATAATTCACTTCACCAGTCAGGCATTATGGCTGGTGCTAGTCCTTTCAATGCCGCCGGTGTTAGT GGCTGCGGTGGTAGGAACTTTGGTATCTTTAGTACAAGCTTTAACGCAAATCCAAGAGCAAACTCTGGGCTTCGTTATCA AATTGATCGCTGTGGTGGTCACACTGTTTGCTACCGCCTCGTGGCTTGGTAATGAATTGCACAGTTTTGCAGAAATGACC ATGATGAAGATACAAGGCATAAGATGA Protein sequence : MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVVTLFATASWLGNELHSFAEMT MMKIQGIR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscS | AAO18039.1 | LscS | Virulence | TTSS locus | Protein | 2e-19 | 79 |
| ssaS | NP_456108.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 4e-08 | 52 |
| ssaS | NP_805091.1 | type III secretion protein | Virulence | SPI-2 | Protein | 4e-08 | 52 |
| ssaS | YP_216428.1 | secretion system apparatus protein SsaS | Virulence | SPI-2 | Protein | 4e-08 | 52 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | Virulence | SPI-2 | Protein | 4e-08 | 52 |
| ssaS | CAA68200.1 | secretion system apparatus, SsaS | Virulence | SPI-2 | Protein | 3e-08 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscS | NP_395179.1 | needle complex export protein | VFG0395 | Protein | 7e-25 | 100 |
| yscS | NP_395179.1 | needle complex export protein | VFG0187 | Protein | 2e-11 | 75 |
| yscS | NP_395179.1 | needle complex export protein | VFG0043 | Protein | 5e-08 | 56 |
| yscS | NP_395179.1 | needle complex export protein | VFG0520 | Protein | 1e-08 | 52 |
