Gene Information

Name : yscR (YPCD1.44)
Accession : NP_395178.1
Strain :
Genome accession: NC_003131
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 32250 - 32903 bp
Length : 654 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGATCCAGTTACCGGATGAAATTAATCTCATCATCGTTTTATCTTTGCTGACTCTGCTTCCATTGATTTCGGTAATGGC
TACATCGTTTGTCAAATTTGCGGTGGTCTTTTCACTACTCCGCAATGCCCTTGGGGTACAGCAAATCCCCCCCAACATGG
CAATGTATGGCTTAGCAATCATCCTTAGTCTTTATGTAATGGCACCCGTTGGCTTCGCGACGCAAGACTATTTACAAGCT
AATGAGGTTAGCCTCACGAACATAGAATCTGTTGAGAAATTCTTTGATGAAGGGCTTGCCCCCTATCGCATGTTCCTTAA
GCAGCATATTCAAGCGCAAGAATACTCTTTTTTTGTTGACAGCACTAAACAGTTATGGCCCAAGCAGTATGCTGACCGGT
TAGAGTCAGACAGCCTGTTCATTTTATTGCCTGCGTTTACGGTGAGTGAGTTGACTCGAGCATTTGAGATAGGCTTTCTC
ATCTATTTACCATTTATCGTCATTGACCTGGTTATTTCCAATATCTTGTTGGCAATGGGGATGATGATGGTTTCCCCCAT
GACTATTTCACTGCCATTTAAATTGCTGCTATTTGTTTTACTTGATGGCTGGACACGACTCACGCATGGGCTGGTGATTA
GCTACGGAGGGTGA

Protein sequence : 
MIQLPDEINLIIVLSLLTLLPLISVMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQA
NEVSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLPAFTVSELTRAFEIGFL
IYLPFIVIDLVISNILLAMGMMMVSPMTISLPFKLLLFVLLDGWTRLTHGLVISYGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-70 83
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-44 57
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-40 55
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-40 55
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-40 55
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-39 54
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-39 54
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-37 52
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-37 52
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-38 52
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-37 52
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-38 52
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-37 52
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-37 52
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-37 52
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-35 49
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-35 49
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-35 49
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-36 49
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-36 49
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-35 48
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-29 48
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-29 48
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 4e-35 48
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-35 48
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 4e-35 48
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-35 48
unnamed AAL06354.1 EscR Virulence LEE Protein 4e-36 48
escR AAK26700.1 EscR Virulence LEE Protein 2e-35 48
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-35 48
escR AAL57527.1 EscR Virulence LEE Protein 2e-35 48
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-35 48
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-35 48
escR AAC31528.1 L0049 Virulence LEE Protein 3e-35 48
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-34 48
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-35 47
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-35 47
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 5e-29 47
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-29 47
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-37 47
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-37 47
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 5e-36 47
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 2e-35 47
escR AAC38369.1 EscR Virulence LEE Protein 1e-34 47
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-36 46
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-36 46
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 6e-36 46
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 2e-33 42
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscR NP_395178.1 type III secretion system protein VFG0394 Protein 2e-82 100
yscR NP_395178.1 type III secretion system protein VFG0188 Protein 2e-71 80
yscR NP_395178.1 type III secretion system protein VFG0519 Protein 2e-40 55
yscR NP_395178.1 type III secretion system protein VFG0044 Protein 5e-43 53
yscR NP_395178.1 type III secretion system protein VFG0551 Protein 7e-30 48
yscR NP_395178.1 type III secretion system protein VFG0827 Protein 1e-35 48
yscR NP_395178.1 type III secretion system protein VFG1773 Protein 7e-38 47
yscR NP_395178.1 type III secretion system protein VFG0715 Protein 7e-35 47
yscR NP_395178.1 type III secretion system protein VFG1012 Protein 3e-34 46
yscR NP_395178.1 type III secretion system protein VFG2455 Protein 1e-33 43
yscR NP_395178.1 type III secretion system protein VFG1259 Protein 2e-26 42
yscR NP_395178.1 type III secretion system protein VFG2338 Protein 1e-22 41