Gene Information

Name : sycN (YPCD1.37c)
Accession : NP_395171.1
Strain :
Genome accession: NC_003131
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 26490 - 26861 bp
Length : 372 bp
Strand : -
Note : Orf42 similar to gi|581840; putative type III secretion protein

DNA sequence : 
GTGAGTTGGATTGAACCCATCATTTCCCATTTCTGCCAGGATCTGGGAGTGCCAACATCTAGCCCCCTTTCGCCTCTTAT
TCAATTAGAGATGGCTCAATCTGGCACGCTGCAACTGGAACAACATGGTGCGACACTGACATTGTGGTTAGCGCGTTCTC
TTGCCTGGCACCGGTGCGAAGATGCTATGGTCAAAGCGCTAACGCTCACGGCGGCCCAAAAGAGTGGCGCTTTACCGCTG
CGAGCGGGGTGGTTAGGGGAAAGTCAGCTGGTGTTATTTGTCTCGCTTGATGAGCGTTCCTTAACCTTGCCCCTTTTACA
TCAAGCTTTCGAACAGTTACTGCGATTGCAGCAAGAGGTGCTTGCGCCGTGA

Protein sequence : 
MSWIEPIISHFCQDLGVPTSSPLSPLIQLEMAQSGTLQLEQHGATLTLWLARSLAWHRCEDAMVKALTLTAAQKSGALPL
RAGWLGESQLVLFVSLDERSLTLPLLHQAFEQLLRLQQEVLAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssN AAO18047.1 LssN Virulence TTSS locus Protein 3e-32 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sycN NP_395171.1 hypothetical protein VFG0387 Protein 2e-51 100
sycN NP_395171.1 hypothetical protein VFG0195 Protein 8e-26 48