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Name : lipA (NMB0082) Accession : NP_273145.1 Strain : Neisseria meningitidis MC58 Genome accession: NC_003112 Putative virulence/resistance : Virulence Product : capsule polysaccharide modification protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3563 EC number : - Position : 91315 - 93429 bp Length : 2115 bp Strand : + Note : identified by similarity to EGAD:15481; match to protein family HMM PF05159 DNA sequence : ATGTTCCTCTTTTCAGACGGCCTACAATCCATTAATAACAATAATCGACGAAAACGCATTGTGAAAAACGCCTACATCCC CTCTCGCGGCATCCGCAAAATCCCCCATCTCTCCACCCTATTGCCTGAATTTCATATCTGCAAAGACGGGAAAGAAGCAG AGGCTGTTGTCGGCTGGGGTTTGCGCCCGACGACACACAAAGCGCGTGCTTTTGCCGCTGAACACCAGCTTCCCTTTATT GCTTTGGAAGACGGCTTTTTACGATCGCTCGGACTGGGTGTCGCCGGTTATCCGCCCTACTCTATCGTCTATGACGACAT CGGCATCTACTACGACACCACACGTCCTTCGCGTTTGGAACAACTGATTCTTGCCGCCGATACCATGCCGTCTGAAACCT TGGCTCAGGCGCAGCAGGCGATGGATTTCATCCTGCAACACCACCTGTCCAAATACAACCACGCGCCCGAACTTTCAGAC GACCATCCTTTACGTTCCCCATCCAAACCCGAAACCGTCCTCATCATCGACCAAACCTTCGGCGATATGGCCATCCAATA TGGCGGCGCAGACGCCTCTACGTTTGAACTGATGTTTCAGACGGCCTTAAATGAAAACCCGCAAGCCGATATCTGGGTAA AAACCCATCCCGATGTTTTGTGCGGCAAAAAACAAGGCTATCTGACCCAACTGGCGCAGCAACACCGCGTCCATCTTTTG GCAGAAGACATCAATCCGATTTCTTTGTTGCAAAACGTTGATAAAGTTTATTGCGTTACCTCGCAAATGGGTTTTGAGGC GCTTTTGTGCGGCAAACCGCTGACCACTTTCGGCCTGCCGTGGTATGCCGGATGGGGTGTAAGCGACGACCGCCATCCTG AAATCAACCGCCTTGTTCAAACCCAACGCCGCGCCACCCGCAACTTGCTGCAGCTCTTCGCCGCAGCCTATCTGCAATAC AGCCGCTACCTCAACCCCAATACCGGCGAAGCAGGCAGCCTCTTTGATGTCATCGACTATCTGGCGACGGTCAAACGTAA AAACGACAAATTGCGTGGCGAGTTATATTGCGTCGGTATGTCTTTGTGGAAACGCGCGGTTGCCAAACCGTTCTTTAACG TACCCTCTTGCCGTCTGAAATTTATCTCTTCCACCCAAAAACTGGCAAGGGTCAAACTGTCCGACGATGCACGCATCCTG GCTTGGGGCAACGGCAAAGAGGCCATCGTCCGCTTTGCCGAACAACACCACATCCCCCTGCTGCGCATGGAAGACGGCTT TATCCGCTCGGTCGGACTCGGCTCCAACTTAGTGCCGCCGCTGTCGCTCGTTACCGACGATATGAGCATTTATTTCAATG CCGAAACCCCGTCCCGTCTTGAATACATCCTACAAAACCAAAACTTCGACGATCAAGACTTTCAGACGGCCTTGAAGCTG CAAAAAATGCTGACCGAAAACCACATCAGTAAATACAACGTCGGCAGCTCAGACTTCACCGCCCCGTCAACCGACAAAAC CGTGATCCTCGTTCCCGGCCAGGTTGAAGATGATGCGTCTATCCGCTACGGTTCGCCCCAAATCTACCGCAATCTGGATT TGCTCCGTACCGTACGCGAACGAAACCCCAATGCCTATATCATCTACAAACCGCATCCCGATGTAGTCAGCGGTAACCGC ATCGGCCATATTTCCCCTGAAGATGCTGCACGATATGCCGACCAAACCGCCGAACAAGCCGACATCCTGACCTGTCTCCA ATACGCAGACGAAATACATACCATGACTTCGCTGACCGGTTTTGAAGCCTTGTTGCGCGGCAAAAAAGTCAGCTGCTACG GCCTGCCTTTTTACGCAGGCTGGGGGCTTACCCAAGATCTGCTCCCCATCCCGCGCCGTAGCCGCAGACTTGAGCTTTGG CAGCTGATTGCCGGCACGCTCATCCACTATCCCGACTACATCCACCCCGAAACCCATCAGGCCATAAATGCAGAAACCGC AGCCCAAATCCTGATACGACAAAAAAATATGCAAAAAAACAACAACGGATTACATCGCGGGTGCTTTGCCAAAAAATTAG GTAAAATCAAACAACTATATCGATCTTTCAAATAA Protein sequence : MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEFHICKDGKEAEAVVGWGLRPTTHKARAFAAEHQLPFI ALEDGFLRSLGLGVAGYPPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQAMDFILQHHLSKYNHAPELSD DHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPDVLCGKKQGYLTQLAQQHRVHLL AEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTTFGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQY SRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARIL AWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMSIYFNAETPSRLEYILQNQNFDDQDFQTALKL QKMLTENHISKYNVGSSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYRNLDLLRTVRERNPNAYIIYKPHPDVVSGNR IGHISPEDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELW QLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 0.0 | 100 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 5e-134 | 50 |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 7e-134 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | VFG0259 | Protein | 0.0 | 100 |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | VFG0704 | Protein | 6e-157 | 58 |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | VFG0692 | Protein | 9e-180 | 58 |
