|
Name : ctrD (NMB0074) Accession : NP_273138.1 Strain : Neisseria meningitidis MC58 Genome accession: NC_003112 Putative virulence/resistance : Virulence Product : capsule polysaccharide export ATP-binding protein CtrD Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1134 EC number : - Position : 83529 - 84179 bp Length : 651 bp Strand : + Note : identified by similarity to EGAD:15804; match to protein family HMM PF00005 DNA sequence : ATGATTTCAGTTGAACACGTTTCCAAACGCTATCTGACCCGCCAAGGTTGGCGGACAGTCTTGCACGATATTAGCTTCAA AATGGAGAAGGGCGAGAAAATCGGTATTCTCGGCCGCAACGGTGCAGGTAAATCGACGCTCATCCGTTTGATCAGTGGCG TTGAGCCGCCGACCACGGGTGAAATCAAGCGGACAATGAGTATTTCTTGGCCTTTGGCATTCTCCGGTGCGTTTCAAGGC AGTCTGACCGGTATGGACAATTTGCGTTTCATCTGCCGGATTTACAATGTCGATATCGATTATGTGAAAGCGTTTACGGA AGAATTTTCGGAGCTGGGGCAATATTTGTATGAGCCGGTGAAACGCTATTCTTCAGGTATGAAAGCGCGTTTGGCTTTTG CGCTGTCGTTGGCGGTGGAGTTTGACTGTTACCTGATTGACGAAGTGATTGCAGTTGGTGACTCGCGTTTTGCCGATAAA TGTAAGTACGAGTTGTTTGAAAAGCGCAAAGACCGTTCCATCATCTTGGTGTCGCACAGCCACAGCGCCATGAAGCAATA TTGCGATAATGCGATGGTGCTGGAAAAAGGGCATATGTACCAGTTTGAAGATATGGACAAAGCCTACGAATATTATAATT CGCTGCCTTAA Protein sequence : MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGKSTLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQG SLTGMDNLRFICRIYNVDIDYVKAFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ctrD | NP_273138.1 | capsule polysaccharide export ATP-binding protein CtrD | Not tested | IHT-A | Protein | 4e-100 | 100 |
| kpsT | YP_854396.1 | polysialic acid transport ATP-binding protein KpsT | Not tested | PAI I APEC-O1 | Protein | 9e-44 | 48 |
| kpsT | CAE85223.1 | KpsT protein | Virulence | PAI V 536 | Protein | 1e-44 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ctrD | NP_273138.1 | capsule polysaccharide export ATP-binding protein CtrD | VFG0258 | Protein | 1e-100 | 100 |
| ctrD | NP_273138.1 | capsule polysaccharide export ATP-binding protein CtrD | VFG0696 | Protein | 1e-85 | 82 |
| ctrD | NP_273138.1 | capsule polysaccharide export ATP-binding protein CtrD | VFG2563 | Protein | 2e-63 | 59 |
| ctrD | NP_273138.1 | capsule polysaccharide export ATP-binding protein CtrD | VFG1449 | Protein | 3e-44 | 48 |
