Gene Information

Name : rkpS (SM_b20832)
Accession : NP_437115.1
Strain :
Genome accession: NC_003078
Putative virulence/resistance : Virulence
Product : cell surface polysaccharide export ABC-2 transporter ATP-binding protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 624306 - 624965 bp
Length : 660 bp
Strand : -
Note : Product confidence : Gene name confidence : probable

DNA sequence : 
ATGATCCGGTTCGAGCAGGCGACGAAATTTGCCCGCACCAAGGGCATCAAGAAGCCGATCATCGAGGATGCATCGCTGAC
GCTCAACCGCGGCAAGAGCGTCGGCCTGCTCGGCCGCAACGGCGCCGGAAAATCGACGCTGCTGCGCCTGATCGCCGGCG
CCATCAAGCTCGACAAGGGCCGAATCATCCGCCGCGGCAAGATTTCCTGGCCGCTCGGCTTTGCCGGCAGCTTTCAGCCA
TCGATGACGGGCGAGCAGAATGTGCGCTTCGTCGCCCGCATCTACGGTGTCGATACGGAGCAACTGATCGGATATGTCGA
GGAGTTCGCCGAGCTCGGCCCTTACTTCAAGGCCCCGGTCGGCACCTATTCCTCCGGCATGAAGGCACGCCTCGCCTTCG
GCTTGAGCATGGGCGTCAACTTCGACTATTATCTGGTCGATGAAATCACCGCCGTTGGTGACGCAAATTTTAAGAAAAAG
TGCCAGGCTGTCTTCGAGACCAGGCTGCAGGATTCAGATGTGGTCATGGTCTCGCACAGCACCGGCACGATCCGCGACTA
TTGCGATTGCGGCGTGGTGCTGGAAAAAGGCAAGATGACCTATTATGAGAATGTCGAAGACGCAATCCGCGCGCACGACA
AGAATATGAAGGAAAGCTAA

Protein sequence : 
MIRFEQATKFARTKGIKKPIIEDASLTLNRGKSVGLLGRNGAGKSTLLRLIAGAIKLDKGRIIRRGKISWPLGFAGSFQP
SMTGEQNVRFVARIYGVDTEQLIGYVEEFAELGPYFKAPVGTYSSGMKARLAFGLSMGVNFDYYLVDEITAVGDANFKKK
CQAVFETRLQDSDVVMVSHSTGTIRDYCDCGVVLEKGKMTYYENVEDAIRAHDKNMKES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-50 50
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 5e-47 49
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 4e-47 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rkpS NP_437115.1 cell surface polysaccharide export ABC-2 transporter ATP-binding protein VFG1449 Protein 4e-51 50
rkpS NP_437115.1 cell surface polysaccharide export ABC-2 transporter ATP-binding protein VFG0258 Protein 2e-47 49
rkpS NP_437115.1 cell surface polysaccharide export ABC-2 transporter ATP-binding protein VFG0696 Protein 3e-47 46
rkpS NP_437115.1 cell surface polysaccharide export ABC-2 transporter ATP-binding protein VFG2563 Protein 8e-46 45