Gene Information

Name : SM_b20295 (SM_b20295)
Accession : NP_436825.1
Strain :
Genome accession: NC_003078
Putative virulence/resistance : Virulence
Product : ABC transporter substrate-binding protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1638
EC number : -
Position : 301924 - 302895 bp
Length : 972 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAACGGGAATGATTTCGCTCGCGCTTGCGGGGCTGCTGATGGCGTCGCAAGCCATGGCTCAAGAGGCGCGCACATT
GCGCCTGGGAATGCAGGGTACGGCCGGGGACCCGCAATTCGAGGGCGTCACCGAGGCCGCGCGCATCATCAAGGAAAAAT
CGGGCGGCCGGCTGACGCTGGAAATCTTCCCGAATTCTCAGCTCGGTACATTCACCGAGATGATGGAGCAGGTGACGCTC
GGCGAGCTCGACTTCACGCTGAACCCGTTTGGCGGTATGGACGCCTGGGTTCCGCGGGCCGTGCTGGCGAGCACTGCCTA
CGTCGTCGGCGACTTCGATCACCTTCAGAAGATCATCGCCTCCGACTGGGGTAAGGGGATCGTCGACGAGATGCGGACCG
AGCACAAGTGGCGCATGGTCGACTCCTGGTACTTCGGGACGCGGCACACGACGGCAAAGAAACCGATCGAAAAGCCTGCC
GATTTCGCGGGCATGAAGCTGCGCGTCCCGAACTCCGCGCCGCTTCTTACCTGGGCGAAGGCGATGGGCGCGAGCCCCAC
GCCGGTCGCATTCGCCGAAGTCTATCTTGCACTCCAGACCAATCAGGTGGACGGCCAGGAAAACCCGCTGCCCATCATCG
ACTCGATGAAGTTCACCGAGGTGCAGTCCCATGTCTCCTTGACCGGGCATCTGGTGCAGGACCAGGTCATCCTCATGTCG
GAAGACACGTGGAATGCGCTCGAGCCCGCCGACCAGAAGGTCGTGATGGAGGCATTCGAGGCGGGTGGCGCCCTCAACGA
CAAGCTCGTCAGCGACAAGGAAGCGAACCTCGTCAGCGATTTTCGCGAGCGCGGCATCACTGTGGTCGAACCCGACAAGG
CAGCGTTCCAGGAAGCGATGAAGCCCGTCTATGCCGATCTCGACGCAAAATTCGGTGCCGACACGGTGAAGACGCTGCTC
GATCTCCGTTAA

Protein sequence : 
MKTGMISLALAGLLMASQAMAQEARTLRLGMQGTAGDPQFEGVTEAARIIKEKSGGRLTLEIFPNSQLGTFTEMMEQVTL
GELDFTLNPFGGMDAWVPRAVLASTAYVVGDFDHLQKIIASDWGKGIVDEMRTEHKWRMVDSWYFGTRHTTAKKPIEKPA
DFAGMKLRVPNSAPLLTWAKAMGASPTPVAFAEVYLALQTNQVDGQENPLPIIDSMKFTEVQSHVSLTGHLVQDQVILMS
EDTWNALEPADQKVVMEAFEAGGALNDKLVSDKEANLVSDFRERGITVVEPDKAAFQEAMKPVYADLDAKFGADTVKTLL
DLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dctP-1 YP_001217320.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 6e-67 45
VC1779 NP_231414.1 C4-dicarboxylate-binding protein Not tested VPI-2 Protein 6e-67 45
VPI2_0027c ACA01844.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 5e-67 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SM_b20295 NP_436825.1 ABC transporter substrate-binding protein VFG1112 Protein 3e-67 45