Gene Information

Name : TRm1b (SM_b20919)
Accession : NP_437757.1
Strain :
Genome accession: NC_003078
Putative virulence/resistance : Unknown
Product : transposase of insertion sequence ISRm1 orfB protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1326279 - 1327109 bp
Length : 831 bp
Strand : +
Note : Gene name confidence :

DNA sequence : 
ATGAAGAGCGTTTGCGAAACTTTGGGTGTCGCCCGCTCGAATATCGCCGCGCGTGCCGCAGGCTCCCCTTCCAGAGCCAG
AGGACGCCCGCCACTACCTGATCGCGAGCTGGTGGAGGACATCAAGGCCGTCATCGCCGATATGCCCACCTACGGCTATC
GGCGTGTCCATGCCATCCTGCGTCGGAATGCCCGGAAACTGGGGCGTTCGTGGCCCAATGCCAAGCGCGTCTACCGGGTG
ATGAAGCTGCACAATCTGCTATTGGTGCGCCACACCGGAGCGGTCGATAATCGTCTCCACGAGGGTCAGGTCGCTGTCGA
ACGTTCGAACATCAGATGGTGCTCCGACGGCTTCGAGATCGGCTGCGACAACAAGGAGAAGGTCCGGGTCGCCTTCGCCC
TCGACTGCTGCGACCGTGAAGCAATCGCCCATGTCGCCACCACCGAGGGCATCAAGAGCCAGGACGTGCAGGACCTCGTG
ATCACAGCAGTGGAGAACCGCTTCGGCCGCATCAACATGCTGTCCGAACCCATCGAATGGCTCACCGACAACGGCTCCTG
CTTCATCGCCAAGGACACCGCGTCCTTGCTCCGCGACATCGGCATGGAACCGTGCACGACGCCGGTGCGCAGCCCGCAAT
CGAACGGCATGGCCGAGGCCTTCGTCAAAACCTTCAAGCGCGATTACGTCGCGGTGAACCCCACCCCGGATGCCGAAACC
GTCATGGCGCAACTGCCGTTCTGGTTCGAGCATTACAATAATCTTCACCCGCACAGCGCCTTAGGATATCAATCGCCGCG
CGAGTTCATCAGCTCGCAATCTCAAACCTGA

Protein sequence : 
MKSVCETLGVARSNIAARAAGSPSRARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILRRNARKLGRSWPNAKRVYRV
MKLHNLLLVRHTGAVDNRLHEGQVAVERSNIRWCSDGFEIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLV
ITAVENRFGRINMLSEPIEWLTDNGSCFIAKDTASLLRDIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVAVNPTPDAET
VMAQLPFWFEHYNNLHPHSALGYQSPREFISSQSQT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 6e-58 57
insD YP_002414033.1 insertion element IS2 transposase InsD Not tested Not named Protein 8e-58 57
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 1e-58 55
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 1e-57 55
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 9e-58 55
unnamed CAC39283.1 hypothetical protein Not tested LPA Protein 1e-59 55
S4061 NP_839230.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 6e-58 55
S3189 NP_838472.2 insertion element IS2 transposase InsD Not tested SHI-1 Protein 3e-57 55
S4050 NP_839218.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 9e-58 55
SF3708 NP_709447.1 IS2 transposase TnpB Not tested SHI-2 Protein 9e-58 55
SF3721 NP_709460.1 IS2 transposase TnpB Not tested SHI-2 Protein 9e-58 55
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 1e-56 54
aec49 AAW51732.1 Aec49 Not tested AGI-3 Protein 1e-56 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TRm1b NP_437757.1 transposase of insertion sequence ISRm1 orfB protein VFG1732 Protein 3e-58 57
TRm1b NP_437757.1 transposase of insertion sequence ISRm1 orfB protein VFG0649 Protein 5e-58 55
TRm1b NP_437757.1 transposase of insertion sequence ISRm1 orfB protein VFG0621 Protein 4e-58 55
TRm1b NP_437757.1 transposase of insertion sequence ISRm1 orfB protein VFG0608 Protein 4e-58 55