Gene Information

Name : sitC (Atu4469)
Accession : NP_356188.2
Strain :
Genome accession: NC_003063
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1610742 - 1611602 bp
Length : 861 bp
Strand : -
Note : -

DNA sequence : 
ATGATAAACAGCCTTCTTGAGCCATTCACCTATGGCTATATGCTGAACGCCATCTGGGTCAGCGCGCTGGTGGGCGGTGT
CTGCGGTTTTCTCTCCGCCTATCTGATGCTGAAGGGCTGGTCGCTGATCGGCGATGCGCTTTCCCATGCCATCGTCCCCG
GTGTGGCCGGGGCCTATATGCTCGGCCTGCCCTTTTCGCTGGGTGCCTTTCTTTCCGGCGGGCTTGCAGCCGGTTCCATG
CTGTTCCTGAACCAGAAGACTCGCCTCAAGGAAGACGCGATCATCGGCCTGATCTTCACCTCGTTTTTCGGGCTTGGCCT
GTTCATGGTGTCGCTCTCGCCCACGTCGGTGAATATCCAGACCATCGTGCTCGGCAATATTCTGGCGATCACGGCGGAAG
ACACCATCCAGCTGGCACTGATCGGCGGCATCAGCCTCCTCGTGCTGGCGCTGAAATGGCGCGATTTCATGGTCGTATTC
TTTGATGAGAACCATGCCCGCACCGTGGGGCTGAAACCGGAAGTGCTGAAGGTGATCTTCTTCACCCTGCTCGCCGCCTC
CACGGTCGCCGCTTTGCAGACGGTCGGAGCCTTCCTCGTTGTCGCCATGGTGGTGACGCCGGGCGCCACCGCCTATCTCC
TGACCGACCGTTTCGAACGGCTGATCCTGATGAGCCTGATCATCGGTGCGGCCACCAGCTTCGTTGGCGCCTATCTCAGC
TATTTTCTCGATGGCGCCACCGGCGGTGTCATCGTCGTGCTGCAGACGGCGATCTTCCTTGCCGCCTTCGTTTTTGCGCC
CAAGCACGGCCTGCTCGCGTCCCGCGCCAAGGCCCGCAAGGCACTGGAGGAAACGCCGTGA

Protein sequence : 
MINSLLEPFTYGYMLNAIWVSALVGGVCGFLSAYLMLKGWSLIGDALSHAIVPGVAGAYMLGLPFSLGAFLSGGLAAGSM
LFLNQKTRLKEDAIIGLIFTSFFGLGLFMVSLSPTSVNIQTIVLGNILAITAEDTIQLALIGGISLLVLALKWRDFMVVF
FDENHARTVGLKPEVLKVIFFTLLAASTVAALQTVGAFLVVAMVVTPGATAYLLTDRFERLILMSLIIGAATSFVGAYLS
YFLDGATGGVIVVLQTAIFLAAFVFAPKHGLLASRAKARKALEETP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 5e-84 76
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-84 76
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-84 76
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 4e-84 76
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-84 76

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC NP_356188.2 iron ABC transporter permease BAC0351 Protein 2e-84 76
sitC NP_356188.2 iron ABC transporter permease BAC0441 Protein 3e-74 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC NP_356188.2 iron ABC transporter permease VFG0527 Protein 2e-84 76