Gene Information

Name : sitD (Atu4468)
Accession : NP_356189.1
Strain :
Genome accession: NC_003063
Putative virulence/resistance : Virulence
Product : iron transport ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1609891 - 1610745 bp
Length : 855 bp
Strand : -
Note : -

DNA sequence : 
GTGAGCGACACTCTCGAACTCGCCATCCTGCCGTTTCAGCTGCCCTTCATGCAATATGCCTTCGTCATTACACTCATGAT
CGCGGTGCCGATGGCGATGCTGTCCTGTTTTCTGGTGCTGAAGGGCTGGTCGCTGATGGGGGATGCGGTCTCCCATGCCG
TGCTGCCCGGCGTGGTGGTGGCCTATATCGCCGGAATACCGCTCTCCATCGGCGCTTTCATCGCCGGCATGATCTGTGCG
CTCGGCACCGGTTTCATCAAGGAAAACAGCCGCATCAAGGAAGATACGGTGCTGGGCATCGTCTTTTCCGGCATGTTCGG
GCTGGGGCTGGTGCTGTATGTGAAGGTGCAGAGCGACATGCATCTCGACCATATTCTCTTCGGCGACATGCTGGGCATTG
CACCCAAAGACATGCTGGAGACGGGTCTGATCGCGCTTTTTGCCACGCTGTTCCTTGGCATCCTGCGCAAGGACCTCTTG
GTCAACGCCTTTGATGCGCAGCATGCCAAAGCCATCGGCCTGCCGGTGCGCGTGCTGCATTATGGCCTGCTGATGATTCT
GTCGCTCACCGTCGTCGGTGCATTGAAGGCAGTGGGCATCATCCTCTCGGTCGCCATGCTGGTGACACCAGGCGCAATCG
CCTTCCTGCTGACCCGGCGGTTTTCCGCCATGATGCTGGCGGCCATTGCGGTGGCGGTTGCCTCATCGCTTTCGGGCATA
TGGGTGAGCTTCCTGATCGACAGTGCGCCGGCTCCCACCATCGTGATGTTCATGAGCCTTGCTTTCGTCGCCACCTTCAT
CCGCACCACCTGGAAGGCCCGGCGGACGGACGCGGCAAGGGAAACAGGCTTCTAG

Protein sequence : 
MSDTLELAILPFQLPFMQYAFVITLMIAVPMAMLSCFLVLKGWSLMGDAVSHAVLPGVVVAYIAGIPLSIGAFIAGMICA
LGTGFIKENSRIKEDTVLGIVFSGMFGLGLVLYVKVQSDMHLDHILFGDMLGIAPKDMLETGLIALFATLFLGILRKDLL
VNAFDAQHAKAIGLPVRVLHYGLLMILSLTVVGALKAVGIILSVAMLVTPGAIAFLLTRRFSAMMLAAIAVAVASSLSGI
WVSFLIDSAPAPTIVMFMSLAFVATFIRTTWKARRTDAARETGF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-73 58
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-73 58
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-73 58
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-73 58
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 9e-74 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD NP_356189.1 iron transport ABC transporter permease BAC0352 Protein 5e-74 58
sitD NP_356189.1 iron transport ABC transporter permease BAC0442 Protein 6e-62 55
sitD NP_356189.1 iron transport ABC transporter permease BAC0441 Protein 4e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD NP_356189.1 iron transport ABC transporter permease VFG0528 Protein 5e-74 58