Gene Information

Name : tetA (Atu4206)
Accession : NP_356448.1
Strain :
Genome accession: NC_003063
Putative virulence/resistance : Resistance
Product : tetracycline resistance protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 1328325 - 1329509 bp
Length : 1185 bp
Strand : +
Note : -

DNA sequence : 
ATGAACAAGGCCCTTATCGTTATTCTCTCAACCGTTGCCCTCGACGCCATTGGCGCAGGCCTGATCTTCCCGATCCTGCC
GGACATCTTGGTCGAGGTGACTGGCGGCGGCGACATCGGGTTCCTCTATGGGGTCATGCTGGGGGTATTCGCCGTCATGC
AATTTGTGTTCTCGCCGATCCTTGGTGCGCTCAGCGACCGGTTCGGTCGGCGCCCGGTCTTGTTGCTTTCTTTGGCCGGT
ACCCTGCTTGATTACCTTGTTATGGCATTTTCCCCGCTCGGCTGGGTGCTCGTCGTCGGGCGGGCCATGGCGGGGATCAC
CAGCGCAAATATGGCGGTGGCAAGCGCCTACATCACTGACATCACCCCAGCCGAGCAGCGCGCGCAGCGGTTTGGCACGG
TTGGTGCCGTGATGAGCCTGGGCTTTATCATCGGTCCCGTCATTGGTGGCGTCATTGGCGCCTGGTGGCTTCGGGCACCA
TTTCTTGTGGCAGCCCTGTTCAATGGCCTCAACCTGTTCGTCGCGCTGTTTGTTCTGCCGGAAAGCCGAAAGGCCGGTCC
GGGCAAGTTTGCGTTCAAGGAACTTAACCCGTTGGCGCCATTGGTGTGGCTTTGGAATTTCAAGCCGCTCCTGCCACTTG
TAACCGTCTCTGTCGTCTTCGGTCTGGTGGCCGCCATCCCGGGAACGATCTGGGTGCTCTATGGCGCCGAGCGGTTCGGA
TGGGATTCGGTGCATATGGGCCTGTCGCTATCGGTTTTCGGCGTCAGTGGCGCCCTGGCGCAGGCCTTTCTCGTCGGGCC
GCTCTCGCGCCGCTTTGGTGATTTGGGCACGTTGATGATCGGCGTTGGCTTTGACATGCTGGCTTATATGCTGATGGCCT
TCGCCAACCAGAGCTGGATGGGCTACGCGGTAGCGCCCCTGTTTGCATTGGGCGGCGTTGCCATGCCGGCGCTGCAATCT
CTGGTAACCAGCCGCGTGAGCGATGATCAGCAGGGCCAGTTGCAGGGCGTGCTCGCCAGCCTCATGAGCCTGGCGGGTAT
AATAGGGCCGGTGCTGACCACCGCAGTGTTCTTTTCCACCAAAAGCATCTGGATCGGGACGATCTGGCTGGTGGGTGCCG
CACTTTATCTTCTCGCCTTGCCGCTGTTCGCAACGGTGAAAACCCCGAAGGCTGTGGCGGCTTAA

Protein sequence : 
MNKALIVILSTVALDAIGAGLIFPILPDILVEVTGGGDIGFLYGVMLGVFAVMQFVFSPILGALSDRFGRRPVLLLSLAG
TLLDYLVMAFSPLGWVLVVGRAMAGITSANMAVASAYITDITPAEQRAQRFGTVGAVMSLGFIIGPVIGGVIGAWWLRAP
FLVAALFNGLNLFVALFVLPESRKAGPGKFAFKELNPLAPLVWLWNFKPLLPLVTVSVVFGLVAAIPGTIWVLYGAERFG
WDSVHMGLSLSVFGVSGALAQAFLVGPLSRRFGDLGTLMIGVGFDMLAYMLMAFANQSWMGYAVAPLFALGGVAMPALQS
LVTSRVSDDQQGQLQGVLASLMSLAGIIGPVLTTAVFFSTKSIWIGTIWLVGAALYLLALPLFATVKTPKAVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 2e-72 47
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 1e-72 47
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 1e-72 47
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 1e-72 47
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 9e-73 47
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 6e-73 47
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 5e-60 43
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 4e-57 43
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 4e-57 43
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 4e-57 43
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 4e-57 43
tetA(B) AAL08445.1 tetracycline resistance protein TetA(B) Not tested SRL Protein 1e-53 41
tetB AEA34667.1 tetracycline resistance determinant Not tested Not named Protein 1e-53 41
tetA(B) AEZ06045.1 tetracycline efflux protein Not tested Tn6167 Protein 2e-53 41
BJAB0868_00281 YP_008211607.1 Permeases of the major facilitator superfamily Not tested AbaR26 Protein 2e-53 41
tetA(B) AEQ20905.1 tetracycline resistance protein Not tested Tn6166 Protein 2e-53 41
BJAB07104_00277 YP_008207742.1 Permeases of the major facilitator superfamily Not tested AbaR25 Protein 2e-53 41
ABZJ_00260 YP_005524216.1 Tetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter) Not tested AbaR22 Protein 2e-53 41
tetA YP_005797160.1 tetracycline resistance protein, class G (TETA(G)) Not tested AbaR4e Protein 9e-53 41
tetA(B) AFH57202.1 tetracycline resistance protein Not tested AbaR4a Protein 1e-53 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetA NP_356448.1 tetracycline resistance protein AF090987.gene.p01 Protein 7e-156 100
tetA NP_356448.1 tetracycline resistance protein AY264780.2.gene3.p01 Protein 3e-84 53
tetA NP_356448.1 tetracycline resistance protein AY743590.gene.p01 Protein 9e-79 50
tetA NP_356448.1 tetracycline resistance protein Y19114.gene.p01 Protein 3e-77 48
tetA NP_356448.1 tetracycline resistance protein NC_011595.7059241.p0 Protein 1e-61 47
tetA NP_356448.1 tetracycline resistance protein X75761.gene.p01 Protein 1e-71 47
tetA NP_356448.1 tetracycline resistance protein NC_010410.6003291.p0 Protein 9e-62 47
tetA NP_356448.1 tetracycline resistance protein NC_010410.6002597.p0 Protein 4e-73 47
tetA NP_356448.1 tetracycline resistance protein CP001485.1.gene2821. Protein 4e-73 47
tetA NP_356448.1 tetracycline resistance protein AF534183.gene.p01 Protein 3e-73 47
tetA NP_356448.1 tetracycline resistance protein NC_011586.7043399.p0 Protein 4e-61 46
tetA NP_356448.1 tetracycline resistance protein NC_009085.4918440.p0 Protein 2e-57 45
tetA NP_356448.1 tetracycline resistance protein NC_011586.7045189.p0 Protein 1e-65 45
tetA NP_356448.1 tetracycline resistance protein Y19116.gene.p01 Protein 3e-55 44
tetA NP_356448.1 tetracycline resistance protein AF133139.gene.p01 Protein 3e-59 43
tetA NP_356448.1 tetracycline resistance protein NC_010410.6002612.p0 Protein 3e-60 43
tetA NP_356448.1 tetracycline resistance protein AF133140.gene.p01 Protein 3e-60 43
tetA NP_356448.1 tetracycline resistance protein L06940.gene.p01 Protein 2e-56 43
tetA NP_356448.1 tetracycline resistance protein AF070999.gene.p01 Protein 6e-57 42
tetA NP_356448.1 tetracycline resistance protein AJ420072.gene.p01 Protein 7e-52 42
tetA NP_356448.1 tetracycline resistance protein AB084246.gene.p01 Protein 7e-54 41
tetA NP_356448.1 tetracycline resistance protein NC_010558.1.6275971. Protein 9e-54 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetA NP_356448.1 tetracycline resistance protein VFG1036 Protein 8e-54 41