Gene Information

Name : TRm1b (SMc02329)
Accession : NP_384708.1
Strain : Sinorhizobium meliloti 1021
Genome accession: NC_003047
Putative virulence/resistance : Unknown
Product : transposase ISRM1
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 672820 - 673512 bp
Length : 693 bp
Strand : +
Note : Gene name confidence : predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence :
ATGAAGAGCGTTTGCGAAACTTTGGGTGTCGCCCGCTCGAATATCGCCGCGCGTGCCGCAGGCTCCCCTTCCAGAGCCAG
AGGACGCCCGCCACTACCTGATCGCGAGCTGGTGGAGGACATCAAGGCCGTCATCGCCGATATGCCCACCTACGGCTATC
GGCGTGTCCATGCCATCCTGCGTCGGAATGCCCGGAAACTGGGGCGTTCGTGGCCCAATGCCAAGCGCGTCTACCGGGTG
ATGAAGCTGCACAATCTGCTATTGGTGCGCCACACCGGAGCGGTCGATAATCGTCTCCACGAGGGTCAGGTCGCTGTCGA
ACGTTCGAACATCAGATGGTGCTCCGACGGCTTCGAGATCGGCTGCGACAACAAGGAGAAGGTCCGGGTCGCCTTCGCCC
TCGACTGCTGCGACCGTGAAGCAATCGCCCATGTCGCCACCACCGAGGGCATCAAGAGCCAGGACGTGCAGGACCTCGTG
ATCACAGCAGTGGAGAACCGCTTCGGCCGCATCAACATGCTGTCCGAACCCATCGAATGGCTCACCGACAACGGCTCCTG
CTTCATCGCCAAGGACACCGCGTCCTTGCTCCGCGACATCGGCATGGAACCGTGCACGACGCCGGTGCGCAGCCCGCAAT
CGAAGGAGCAGACATCACGATGCACCTTGTTGGATTGGTTGAGCGTCAATTAA

Protein sequence :
MKSVCETLGVARSNIAARAAGSPSRARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILRRNARKLGRSWPNAKRVYRV
MKLHNLLLVRHTGAVDNRLHEGQVAVERSNIRWCSDGFEIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLV
ITAVENRFGRINMLSEPIEWLTDNGSCFIAKDTASLLRDIGMEPCTTPVRSPQSKEQTSRCTLLDWLSVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 3e-40 54
c5197 NP_757045.1 transposase insD Not tested PAI II CFT073 Protein 9e-43 53
insD YP_854263.1 IS2 transposase Not tested PAI I APEC-O1 Protein 8e-43 53
insD AAZ04432.1 IS2 transposase Not tested PAI I APEC-O1 Protein 6e-43 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TRm1b NP_384708.1 transposase ISRM1 VFG0649 Protein 1e-40 54