|
Name : TRm1a (SMc02298) Accession : NP_384707.1 Strain : Sinorhizobium meliloti 1021 Genome accession: NC_003047 Putative virulence/resistance : Unknown Product : transposase ISRM1 Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2963 EC number : - Position : 672431 - 672823 bp Length : 393 bp Strand : + Note : Gene name confidence : predicted by Codon_usage; predicted by Homology; predicted by FrameD DNA sequence : ATGACTAGCAGCAATTTTAAGATGGAAGTTCTCTCCGGGCCGGAACGTCGGCGGCGCTGGAGCACGGCAGAGAAGCTGGC GATCATCCACGAGACCTATGAGGCGGACGCGACGGTGAGCATCGTCGCGCGTCGGCACGGCATCCAGCCGAACCAGTTGT TCGCCTGGCGCAAGCTGGCGTCCCAAGGGGCACTGACGGCGACGGCCGCCGAAGAGGAGGTCGTTCCGGCTTCCGAATAC CGGGCGCTTCAGGCCCAGGTGAAGGAGTTGCAACGCCTGTTGGGCAAGAAGACGATGGAGAGCGAAATCCTGAAGGAAGC CCTCGAAATCGCCGGTAGCCCAAAAAAACATCTGTTGCGCTCGCTCTCTCTTCCGAGGGGGATTTTGGGATGA Protein sequence : MTSSNFKMEVLSGPERRRRWSTAEKLAIIHETYEADATVSIVARRHGIQPNQLFAWRKLASQGALTATAAEEEVVPASEY RALQAQVKELQRLLGKKTMESEILKEALEIAGSPKKHLLRSLSLPRGILG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpG | AAD44740.1 | TnpG | Not tested | SHI-2 | Protein | 2e-21 | 60 |
| unnamed | AAL57520.1 | IS2 transposase | Not tested | LEE | Protein | 2e-21 | 60 |
| st02 | CAC81840.1 | ST02 protein | Not tested | LEE II | Protein | 2e-21 | 60 |
| ECO26_5247 | YP_003232129.1 | insertion sequence 2 OrfA protein | Not tested | LEE | Protein | 3e-21 | 60 |
| S3188 | NP_838471.2 | insertion sequence 2 OrfA protein | Not tested | SHI-1 | Protein | 3e-21 | 60 |
| S4060 | NP_839229.2 | insertion sequence 2 OrfA protein | Not tested | SHI-2 | Protein | 3e-21 | 60 |
| SF2984 | NP_708758.3 | IS2 ORF1 | Not tested | SHI-1 | Protein | 2e-21 | 60 |
| aec50 | AAW51733.1 | Aec50 | Not tested | AGI-3 | Protein | 2e-21 | 60 |
| S4049 | NP_839217.2 | insertion sequence 2 OrfA protein | Not tested | SHI-2 | Protein | 1e-20 | 59 |
| SF3709 | NP_709448.3 | IS2 ORF1 | Not tested | SHI-2 | Protein | 7e-21 | 59 |
| SF3722 | NP_709461.3 | IS2 ORF1 | Not tested | SHI-2 | Protein | 7e-21 | 59 |
| unnamed | AAL67376.1 | insertion sequence protein | Not tested | PAI II CFT073 | Protein | 8e-18 | 53 |
| insC | YP_002414034.1 | IS2 insertion element repressor InsA; KpLE2 phage-like element | Not tested | Not named | Protein | 1e-17 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TRm1a | NP_384707.1 | transposase ISRM1 | VFG0648 | Protein | 6e-22 | 60 |
| TRm1a | NP_384707.1 | transposase ISRM1 | VFG0622 | Protein | 2e-21 | 59 |
| TRm1a | NP_384707.1 | transposase ISRM1 | VFG0609 | Protein | 2e-21 | 59 |
| TRm1a | NP_384707.1 | transposase ISRM1 | VFG1733 | Protein | 3e-18 | 53 |
