Gene Information

Name : SMc02156 (SMc02156)
Accession : NP_384596.1
Strain : Sinorhizobium meliloti 1021
Genome accession: NC_003047
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4588
EC number : -
Position : 539798 - 540595 bp
Length : 798 bp
Strand : +
Note : Product confidence : hypothetical; Gene name confidence : hypothetical; predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence : 
GTGCGAATTGCAGTTCTGATTGTTCTGACGACTGTCCTTGCCATGCCTGCTTCGGCGCAGGATACCGCACTCCATGACCC
TTCGATCAGCCGCGATGCACAGGACGGGGTGATCCGTCTTTACGGTGCGGGCGGTCCGGACACCGCCATCCGGAAAGTCG
CGGATGTCTGGACGAAGGAGACGGGCCGCAAGGTCGAAATCACCGCCGGACCGGAGAAGACATGGTCGAAAAAGGCGCAG
GGCGATGCGGATGTCATCTGGGGCACGTCCGAACAGGCGATGACCGCTTTTCTCGAAACCTATAAGGGCTTCTCATCGGA
TCAGGTCGAGCCGATATACCTTCGTCCGGCAGTCATTGCGGTGAAAGCGGGCAATCCCAAGGGGATCATGAAATTCGAGG
ACCTTCTGGCGGAAGGGACGAAAATCGTCGTAACCGAAGGAGCCGGCGTCGCCAACACGTCGGGGACGGGTGTGTGGGAG
GATATCGCGGGGCGTCTTGGCCGGCTGGAGGATGTCGCGGCCTTCCGCAGCAACATCGTCGCTTTCGAACAGGGCTCCGG
CGCAAGCTTCAAGGCGTTCAAAGCATTGGATGCAGACGCCTGGATCACCTGGCCGAATTGGCCGCTTTCGAACCCCGACA
CCCTGGAGGCGGTGCCGCTGTCGAGCGATCGCGCAATATGGCGCGACCTCAGCGTGGCCCTGGCCCCCGACGCCGATCCC
GATGCAAAGGCGTTTCTGGATTATCTGATCTCCGATGAGGCGCAGAAGATCATGTCCCGTGAAGGTTGGGTACGCTGA

Protein sequence : 
MRIAVLIVLTTVLAMPASAQDTALHDPSISRDAQDGVIRLYGAGGPDTAIRKVADVWTKETGRKVEITAGPEKTWSKKAQ
GDADVIWGTSEQAMTAFLETYKGFSSDQVEPIYLRPAVIAVKAGNPKGIMKFEDLLAEGTKIVVTEGAGVANTSGTGVWE
DIAGRLGRLEDVAAFRSNIVAFEQGSGASFKAFKALDADAWITWPNWPLSNPDTLEAVPLSSDRAIWRDLSVALAPDADP
DAKAFLDYLISDEAQKIMSREGWVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
acfC AAK20798.1 accessory colonization factor AcfC Virulence VPI Protein 2e-36 44
acfC AAA82706.1 AcfC Virulence VPI Protein 2e-36 44
acfC AAK20768.1 accessory colonization factor AcfC Virulence VPI Protein 2e-36 44
VC0841 NP_230489.1 accessory colonization factor AcfC Virulence VPI-1 Protein 3e-36 44
acfC YP_001216322.1 accessory colonization factor AcfC Virulence VPI-1 Protein 3e-36 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMc02156 NP_384596.1 hypothetical protein VFG0105 Protein 1e-36 44
SMc02156 NP_384596.1 hypothetical protein VFG0839 Protein 3e-35 42