Gene Information

Name : sitD (SMc02506)
Accession : NP_387135.1
Strain : Sinorhizobium meliloti 1021
Genome accession: NC_003047
Putative virulence/resistance : Virulence
Product : iron transport system membrane ABC transporter protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3286617 - 3287471 bp
Length : 855 bp
Strand : +
Note : Product confidence : Gene name confidence : predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence : 
ATGATGCCTTCGCTCGACATGCTCCTTGCCGTCTTCGAGTTCGAGTTCATGCGCAATGCGCTGCTGATCTCGGTCCTGGT
TGCGATTCCGACGGCGATGCTCTCCTGCTTCCTGGTCCTCAAGGGCTGGTCGCTGATGGGCGACGCGATCTCGCATGCGG
TCTTCCCCGGCGTCGTCGTTTCCTACATCGTCGGCCTGCCGCTCGCCGTCGGCGCCTTTACGGCCGGCATGTGCTGCGCG
CTTCTGACCGGCTACCTGAAGGAAAACAGCCGCATCAAGCAGGACACGGTGATGGGCGTCGTCTTTTCCGGCATGTTCGG
CCTTGGCCTTGTGCTCTACACCAAGATCCAGAGCGACGTGCATCTCGATCACATCCTTTTCGGCGACATGCTAGGCATCG
GCTGGGGCGACATTCTGGAGACGGGCCTCATCGCGCTTTTCGCCGCCGGCATTCTCGGCTTGAAATGGCGCGACCTGCTG
CTCCACGCCTTCGATCCGGCTCAGGCGCGCGCCATCGGTCTGAGGGTCGGCTGGCTGCATTACGGACTGCTCGCGATCCT
GTCGCTGACGATCGTCGGTGCGCTCAAGGCGGTCGGGCTGATCCTGGCCATCGCCATGCTCATTGCCCCCGGCGCGATCG
CCTATCTCGTCACGCGGACATTCGGCGCCATGCTGGCGGTCGCGGTGATGGTCGCCGTCGCCGCCTCCTTCTGCGGCGTC
TATCTCTCCTTCTTCATCGACAGCGCACCGGCACCCACCATCGTCCTTCTGATGACGGCGATGTTCCTGCTCGCCTTCGC
CTATTCCACCTGGAAGATTGCGCGTGCCGAGGCGCAGCGGACAAGCGTGGAATAG

Protein sequence : 
MMPSLDMLLAVFEFEFMRNALLISVLVAIPTAMLSCFLVLKGWSLMGDAISHAVFPGVVVSYIVGLPLAVGAFTAGMCCA
LLTGYLKENSRIKQDTVMGVVFSGMFGLGLVLYTKIQSDVHLDHILFGDMLGIGWGDILETGLIALFAAGILGLKWRDLL
LHAFDPAQARAIGLRVGWLHYGLLAILSLTIVGALKAVGLILAIAMLIAPGAIAYLVTRTFGAMLAVAVMVAVAASFCGV
YLSFFIDSAPAPTIVLLMTAMFLLAFAYSTWKIARAEAQRTSVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-77 67
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-77 67
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-77 66
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-77 66
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-77 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD NP_387135.1 iron transport system membrane ABC transporter protein BAC0352 Protein 3e-77 67
sitD NP_387135.1 iron transport system membrane ABC transporter protein BAC0442 Protein 6e-58 57
sitD NP_387135.1 iron transport system membrane ABC transporter protein BAC0441 Protein 7e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD NP_387135.1 iron transport system membrane ABC transporter protein VFG0528 Protein 3e-77 67