Gene Information

Name : sitC (SMc02507)
Accession : NP_387134.1
Strain : Sinorhizobium meliloti 1021
Genome accession: NC_003047
Putative virulence/resistance : Virulence
Product : iron transport system membrane ABC transporter protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3285763 - 3286620 bp
Length : 858 bp
Strand : +
Note : Product confidence : Gene name confidence : predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence : 
ATGATCGCCACGCTCATCGAGCCGTTCGCCTATAGCTACATGGTGAATGCCATGTGGGTAAGCGCGCTGGTGGGCGCGGT
CTGCGCGTTTCTTTCGGCCTATCTCATGCTGAAGGGCTGGTCGCTGATCGGCGATGCGCTCTCCCACTCGATCGTGCCGG
GCGTCGCCGGGGCCTATATGCTCGGGCTTCCCTTCTCGCTCGGCGCCTTCTTTTCCGGTGCCCTTGCCGCCGGTGCCATG
CTGTTCCTCAACCAGCGCACGCGGCTGAAGGAGGACACGATCATCGGTTTGATCTTCACCTCCTTCTTCGGCCTCGGCCT
GTTCATGGTCTCTCTGTCGCCGACCTCGGTGAACATTCAGACGATCGTGCTCGGCAATATCCTCGCCATCACCCCGGCCG
ACACGTTGCAGCTCGCCATCATCGGCGTCGTCTCACTCATGATCCTGTCCGCCAAGTGGAAGGACCTGATGGTGACCTTC
TTCGACGAAAGCCACGCCCGCTCCATCGGCATCAACACCACCTTTCTGAAGGTGCTCTTCTTCACGCTGCTCTCGGCCTC
GACGGTGGCGGCGCTGCAGACGGTCGGCGCCTTCCTGGTCGTCGCCATGGTCGTCACCCCCGGCGCGACCGCCTATCTCC
TGACCGACCGTTTTCCGCGGCTGATCGTGATCAGCATCGCGATCGGGGCCCTGACGAGCTTCGTCGGCGCCTATGCGAGC
TACTTCCTCGACGGCGCAACCGGCGGCATCATCATCGTGCTGCAGACCGCGATCTTCCTGTTCGCCTTCGTACTTGCCCC
GAAACACGGGCTGCTCGCCGCCCGCCGCCGCGCATCCGAGGCTCTGGAGACCGCATGA

Protein sequence : 
MIATLIEPFAYSYMVNAMWVSALVGAVCAFLSAYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGALAAGAM
LFLNQRTRLKEDTIIGLIFTSFFGLGLFMVSLSPTSVNIQTIVLGNILAITPADTLQLAIIGVVSLMILSAKWKDLMVTF
FDESHARSIGINTTFLKVLFFTLLSASTVAALQTVGAFLVVAMVVTPGATAYLLTDRFPRLIVISIAIGALTSFVGAYAS
YFLDGATGGIIIVLQTAIFLFAFVLAPKHGLLAARRRASEALETA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-81 79
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-81 79
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 9e-81 79
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-80 79
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-80 79

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC NP_387134.1 iron transport system membrane ABC transporter protein BAC0351 Protein 6e-81 79
sitC NP_387134.1 iron transport system membrane ABC transporter protein BAC0441 Protein 2e-69 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitC NP_387134.1 iron transport system membrane ABC transporter protein VFG0527 Protein 5e-81 79