Gene Information

Name : sitB (SMc02508)
Accession : NP_387133.1
Strain : Sinorhizobium meliloti 1021
Genome accession: NC_003047
Putative virulence/resistance : Virulence
Product : iron transport ATP-binding ABC transporter protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3284831 - 3285766 bp
Length : 936 bp
Strand : +
Note : Product confidence : Gene name confidence : predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence : 
ATGAACCTTCAGGAAAAGGCCCGCGCCTATCCGGGAGCAGCTCCGCAAGAGGAGGATGGCGGCATTCGCGTCAGCGGCGC
TACGGTGACCTACCGCAACGGCCACCGGGCGCTGCGCGACGCCTCCTTCGAAATCCCGACGGGCACCATCGCGGCCCTTG
TCGGCGTCAACGGCAGCGGCAAGTCGACGCTGTTCAAAGCTATCATGGGCTTCGTCCGGCTGGCCAAGGGCGACATTTCG
ATCCTGGGCCTCACCGTGCCGCAGGCACTGAGACAGAACCTCGTCGCCTATGTCCCGCAGGCCGAAGAGGTCGACTGGAA
TTTTCCCGTCCTCGTCGAAGACGTGGTGATGATGGGCCGTTACGGCCATATGAACATGCTGCGCATCCCGAAAAAGGCCG
ATCACGAGGCGGTCGAGACGGCGCTGGCGCGGGTCGGCATGAGCGAGTTCCGCAAGCGCCAGATCGGCGAGCTTTCCGGC
GGTCAGAAGAAGCGGGTCTTCCTGGCCCGGGCGCTTGCCCAGAACGGCCGCGTCATCCTGCTCGACGAGCCTTTCACCGG
GGTCGACGTGAAAACGGAGGACGCGATCATCCGCCTGCTCGTCGCGCTTCGCGAAGAAGGCCGTGTGATGCTCGTCTCCA
CCCATAATCTCGGAAGCGTGCCGGAATTCTGCGACCGCACCATCCTTCTGAAAAATACGGTGCTCGCCTACGGTCCCACG
GAAACCACCTTCACCCGCGAAAACCTGGAGCTCGCCTTCGGGGGCGTCCTGCGTCACTTCGTGCTCGGCGGAGAGAACCT
CCATGACGATGCCGATCCACGCCAGCTCTCGGTCATCAGCGACGACGAGCGTCCGCTCGTCATGTATGGCGCCCGCGACC
GCATGGTTGCGCAGCCGGCCAAACCGGAATCGGAATCCGAGGCGGACTCCGAATGA

Protein sequence : 
MNLQEKARAYPGAAPQEEDGGIRVSGATVTYRNGHRALRDASFEIPTGTIAALVGVNGSGKSTLFKAIMGFVRLAKGDIS
ILGLTVPQALRQNLVAYVPQAEEVDWNFPVLVEDVVMMGRYGHMNMLRIPKKADHEAVETALARVGMSEFRKRQIGELSG
GQKKRVFLARALAQNGRVILLDEPFTGVDVKTEDAIIRLLVALREEGRVMLVSTHNLGSVPEFCDRTILLKNTVLAYGPT
ETTFTRENLELAFGGVLRHFVLGGENLHDDADPRQLSVISDDERPLVMYGARDRMVAQPAKPESESEADSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-91 71
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-91 71
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-90 70
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-90 70
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-90 70

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB NP_387133.1 iron transport ATP-binding ABC transporter protein BAC0350 Protein 4e-90 70
sitB NP_387133.1 iron transport ATP-binding ABC transporter protein BAC0440 Protein 7e-90 64
sitB NP_387133.1 iron transport ATP-binding ABC transporter protein BAC0400 Protein 6e-46 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitB NP_387133.1 iron transport ATP-binding ABC transporter protein VFG0526 Protein 3e-90 70