Gene Information

Name : sitA (SMc02509)
Accession : NP_387132.1
Strain : Sinorhizobium meliloti 1021
Genome accession: NC_003047
Putative virulence/resistance : Virulence
Product : iron-binding periplasmic ABC transporter protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3283929 - 3284834 bp
Length : 906 bp
Strand : +
Note : Product confidence : Gene name confidence : predicted by Codon_usage; predicted by Homology; predicted by FrameD

DNA sequence : 
ATGATCCATCCAACGAGGCGCATGATCGTGGCGGCAGCAGCGGCGATGGCTGCTCTATCGCTCATGCCGGCGGCGGCCCG
GGCGGCGGAAAAGCTCAAGGCCGTCACCACCTTCACGGTCATCGCCGATATGGCGCAGAACGTCGCGGGCGATGCCGCGG
TGGTCGAATCGATCACCAAGCCGGGCGCCGAGATCCACAATTACCAGCCGACGCCCCGCGATATCCTCAAGGCGCATGAT
GCCGACCTCATTCTGTGGAACGGGCTGAACCTCGAGCTCTGGTTCGAAAGGTTCTTCCAGAACTTCGACGGCGTTCCCGG
CGTCGTCGTCTCCGAAGGCGTCGAGCCGATGGGCATCGCCGAGGGGCCCTATACCGGCAAACCCAACCCGCATGCCTGGA
TGTCGCCTTCGGCCGCGCTGATCTATGTCGACAATATCCGCGACGCCTTCGTGCAACACGATCCCCCGAATGCCGAGGTC
TACAAGGCAAATGCCGAGGCCTACAAGAAGAAGATCGAGGCGGCGGTCGCACCCATCCGCACCGAGCTCGAAAGGATACC
GGCGGAAAGGCGATGGCTCGTTTCGAGCGAGGGCGCATTCAGCTATCTCGCCCGCGATTTCGGCATGAAGGAGCTTTATC
TTTGGCCGATCAATGCCGACCAGCAAGGCACGCCGCAGCAGGTGCGCAAGGTGATCGACGTGGTTCGGGCCAATCGGATA
CCCGTAGTCTTTTCCGAAAGCACCATTTCGCCCGACCCCGCCGAGCAGGTCGCGCGGGAGACGGGTGCAAAATACGGGGG
CGTGCTCTATGTCGACTCCTTGAGCGAGGCCGACGGCCCCGTTCCGACCTATATCGATCTGCTGCGCGTTACATCGGAAA
CGATCGCGAAAGGCTTGTCGCAATGA

Protein sequence : 
MIHPTRRMIVAAAAAMAALSLMPAAARAAEKLKAVTTFTVIADMAQNVAGDAAVVESITKPGAEIHNYQPTPRDILKAHD
ADLILWNGLNLELWFERFFQNFDGVPGVVVSEGVEPMGIAEGPYTGKPNPHAWMSPSAALIYVDNIRDAFVQHDPPNAEV
YKANAEAYKKKIEAAVAPIRTELERIPAERRWLVSSEGAFSYLARDFGMKELYLWPINADQQGTPQQVRKVIDVVRANRI
PVVFSESTISPDPAEQVARETGAKYGGVLYVDSLSEADGPVPTYIDLLRVTSETIAKGLSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-88 74
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-88 74
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-88 74
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-88 74
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-88 74

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA NP_387132.1 iron-binding periplasmic ABC transporter protein BAC0349 Protein 8e-89 74
sitA NP_387132.1 iron-binding periplasmic ABC transporter protein BAC0439 Protein 6e-90 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA NP_387132.1 iron-binding periplasmic ABC transporter protein VFG0525 Protein 7e-89 74