Gene Information

Name : SMc00744 (SMc00744)
Accession : NP_386734.1
Strain : Sinorhizobium meliloti 1021
Genome accession: NC_003047
Putative virulence/resistance : Resistance
Product : transporter
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 2836830 - 2838029 bp
Length : 1200 bp
Strand : +
Note : -

DNA sequence :
ATGCCTACAAAAAACCATGTCTGGCGCTATTCGCTGCCGGCAGCGCTGCTGCTGATGGCGCCCTTCGATATCCTCGCCTC
TCTGGCCATGGATATTTATCTCCCGATCGTTCCTGCGATGCCCGGTATTCTCGGCACCAGCCCCGCCGTGGTTCAGCTCA
CGCTGAGCCTCTATATGGTGATGCTCGGCCTCGGCCAGATCGTCTTCGGGCCCGTCTCCGACCGCATCGGGCGACGGCCA
GTCCTGATCGGCGGAGCGATGCTGTTCGCCGCCGCATCGTTCTGCCTCGCGGCTTCCTCCAGCGCCATCCCTTTCGTCGC
CTTCCGCTTCCTCCAGGCGGTTGGCGCATCTGCGGCTCTGGTGGCCACCTTTGCAACGATCCGGGATGTATATGCCGACC
GCCCGGAAAGCGTGGTCATCTACAGCCTGTTCAGTTCCATTCTGGCATTCGTTCCCGCTCTGGGGCCGATAACCGGTGCC
ATGCTGGCGGAGAGGTTCGGATGGCGCTCGATCTTCGTTACGCTGGGTGCATTAGCCATAATCGCGCTGCTGCAGGCACT
GCCTCGCTGGCATGAATCCCGCCCTTCGGCGGCAGCGCTGTCGCGGCACGCATTCGGCCCCCTTCTCCGCAGCCTCGCCT
TCTGGACCTATACCCTCGGCTTCAGCGCCGCCATGGGCACGTTCTTCGTGTTCTTTTCCACCTCGCCGCGCGTGCTGATC
GACAAGGCAGGATATTCGGAGCTGCAGTTCAGCCTCGCCTTTGCAACTGTAGCAATCGTGATGATCATCACGGCGCGCTT
TGCCGAGCGGTTCGTCTCCCGATGGGGAACTTCGGGCAGCCTCCTGCGGGGCATGTGCATGTTGCTTCTCGGGGCAGCGC
TCCTGATTGCCGGGGAAACGTTCGGCGTCCCTTCGTCCTGGACCTTCGTCATGCCGATGTGGGTGATGGCGGTCGGCATC
GTCTTCACCGTATCGGTGACCGCAAACGGCGCTCTCGAGGATTTTGGAGACATGGCGGGTTCGGCGGTCGCAGTCTATTT
CTGCGTCCAAAGCCTCATCGTCGGGACGGCGGGGACACTGCTCGTGATCGGACTGCCCGGCGACAGCGCGTGGCCGCTTG
TCGTCTATGCCTCGATTATGGCCGGCGTCGTGCTGATCGCGCGCCGGCAGTTGCATTCCAGAAGGCATGTGCAGGCATGA

Protein sequence :
MPTKNHVWRYSLPAALLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYMVMLGLGQIVFGPVSDRIGRRP
VLIGGAMLFAAASFCLAASSSAIPFVAFRFLQAVGASAALVATFATIRDVYADRPESVVIYSLFSSILAFVPALGPITGA
MLAERFGWRSIFVTLGALAIIALLQALPRWHESRPSAAALSRHAFGPLLRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLI
DKAGYSELQFSLAFATVAIVMIITARFAERFVSRWGTSGSLLRGMCMLLLGAALLIAGETFGVPSSWTFVMPMWVMAVGI
VFTVSVTANGALEDFGDMAGSAVAVYFCVQSLIVGTAGTLLVIGLPGDSAWPLVVYASIMAGVVLIARRQLHSRRHVQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
floR YP_005176183.1 florfenicol / chloramphenicol efflux protein Not tested ICEPmu1 Protein 2e-105 68
flo AAK02049.1 chloramphenicol and florfenicol resistance protein Not tested SGI1 Protein 1e-106 67
floRc AGK06972.1 chloramphenicol and florfenicol resistance protein Not tested SGI1 Protein 1e-106 67
floRc AGK07102.1 chloramphenicol and florfenicol resistance protein Not tested SGI1 Protein 1e-106 67
cmlA9 ABZ01840.1 CmlA9 chloramphenicol efflux protein Not tested SGI2 Protein 3e-106 66
cmlA CAJ77032.1 chloramphenicol and florfenicol resistance protein Not tested AbaR1 Protein 3e-106 66
cml(A)5 ACY75522.1 CmLA(5) Not tested Tn6060 Protein 2e-80 50
cmlA5 CAJ77046.1 Chloramphenicol resistance protein Not tested AbaR1 Protein 1e-79 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMc00744 NP_386734.1 transporter DQ522237.1.gene4.p01 Protein 1e-80 50
SMc00744 NP_386734.1 transporter NC_010410.6003586.p0 Protein 1e-80 50
SMc00744 NP_386734.1 transporter AF156486.gene.p01 Protein 1e-79 50
SMc00744 NP_386734.1 transporter DQ984668.gene.p01 Protein 1e-80 50
SMc00744 NP_386734.1 transporter AF294653.1.gene4.p01 Protein 6e-81 50