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Name : clpB (SMc02433) Accession : NP_386714.1 Strain : Sinorhizobium meliloti 1021 Genome accession: NC_003047 Putative virulence/resistance : Virulence Product : ATP-dependent protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2814190 - 2816796 bp Length : 2607 bp Strand : - Note : Product confidence : probable; Gene name confidence : probable; predicted by Codon_usage; predicted by Homology; predicted by FrameD DNA sequence : ATGGATATCGAAAAATATTCGGAACGCGTCCGCGGTTTCCTGCAGTCGGCCCAGACCTATGCGCTGGCCGAAGGGCACCA GCAATTTACGCCGGAGCACGTTCTCAAGGTATTGCTCGACGACGATCAGGGCATGGCGGCTTCGCTTATCGAGCGCGCCG GCGGCAATGCGCGGGAAGCCAAGGTCGGTACGGCCGCAGCTTTGGCGAAGCTTCCGAAGGTGACCGGCGGCAACGGCTCG GTCTATCTGTCGCAGCCGCTCGCCAAGGTTTTCACCGCAGCCGAAGATGCGGCCAAGAAGGCCGGCGACAGCTTCGTAAC CGTCGAACGCCTGCTCCTGGCGCTGGCGATCGAAAGCTCGGCCGCGACGGCGTCGATCCTCTCCAAGGCCGGCGTCACGC CGACGAAGCTCAACCAGGTCATCAACGAAATCCGCAAGGGCCGCACCGCCGACAGCGCCAATGCCGAACAAGGCTTCGAT TCGCTCAAGAAATATGCGCGCGATCTGACCGCCGAGGCGAGGGAAGGCAAGCTCGATCCGGTGATCGGCCGCGACGACGA GATTCGCCGAACGATCCAGGTGCTCTCGCGCCGGACGAAGAACAATCCCGTGCTGATCGGCGAGCCGGGCGTCGGCAAGA CCGCCATCGCGGAAGGCCTGGCGCTCAGGATCGTCAACGGCGATGTGCCTGAAAGCCTGAAGGACAAGCGCCTGATGGCG CTCGACATGGGCGCGCTGATCGCCGGTGCGAAGTTCCGCGGTGAATTCGAAGAGCGGCTCAAGGCCGTGCTGAACGAAGT GCGCTCGGAAGGTGGCGAGATCATCCTCTTCATCGATGAAATGCACACACTGGTCGGTGCAGGCAAGGCGGACGGGGCTA TGGATGCCTCGAACCTCCTGAAGCCCGCGCTTGCCCGCGGCGAACTGCACTGCGTCGGCGCGACGACGCTCGACGAATAC CGCAAGCATGTCGAGAAGGACGCAGCCCTTGCCCGCCGGTTCCAGCCGGTGATGGTCGAGGAACCGACGGTCGAGGATAC GATCTCGATCCTGCGCGGCCTGAAGGAAAAATACGAGCAGCACCACAAGGTGCGGATCTCCGATTCCGCGCTGGTTGCGG CTGCGGCACTTTCCAACCGCTACATCACCGATCGTTTCCTTCCGGACAAGGCGATCGACCTCATGGACGAGGCAGCCTCG CGCCTCAGGATGCAGGTCGATTCGAAGCCGGAAGAACTCGACGAACTCGACAGGCGCGTCATTCAACTGAAGATCGAACG TGAGGCCTTGAAAAAGGAGACCGACGTTTCCTCCAAGGATCGCCTTGCCAAGCTCGAACTCGATCTGTCTTCGCTCGAAG AGGAGGCAGCCGCATTGACGGCGCGCTGGCAGGCCGAGAAGCAGAAGCTCGGGCAGGCCGCCGATCTCAAGAAACAGCTC GACGAAGCGCGCAACGAGCTGCAGATCGCACAGCGCAAGGGCGAATTCCAGCGGGCAGGGGAGCTTGCCTACGGGGTGAT CCCGAATCTCGAAAAGGAACTGGCCGAAGCGGAAAGCCAGGATGGTGCCAGCGCCAACCCGATGGTGCAGGAGGTCGTGA CCCCTGACAACATCGCCCATATCGTGTCACGCTGGACCGGCATTCCGGTCGACAAGATGCTGGAAGGCGAGCGCGACAAG CTGCTCAGGATGGAAGACGAGCTGGCGAAATGGGTCGTCGGTCAGGGTGATGCCGTGCAGGCTGTCTCGCGGGCGGTTCG CCGTTCGCGCGCAGGGCTTCAGGATCCGAACCGGCCGATCGGCTCCTTCATCTTCCTGGGTCCGACCGGCGTCGGCAAGA CGGAGCTCACCAAGGCGCTTGCCCGCTTCCTCTTCGACGACGAAACCGCGCTGATGCGGATCGACATGTCCGAGTACATG GAGAAGCATTCGGTCGCCCGCCTGATCGGCGCGCCTCCCGGCTATGTCGGTTACGAGGAGGGTGGGGCGCTGACGGAATC GGTCCGCCGCCGGCCCTATCAGGTCGTGCTGTTCGACGAGATCGAGAAGGCGCATCCGGATGTCTTTAACGTGCTTCTGC AGGTGCTTGACGATGGGCGTCTGACCGATGGTCAGGGGCGCACGGTCGACTTCAAGAACACGATGATCATCATGACCTCC AACCTCGGTGCGGAATACCTGACCGCACTCGGCGAAAACGAGGACAGCGATGCGGTTCGCGATCAGGTCATGGAAGTGGT GAGAGCCGCTTTCCGTCCGGAATTTCTGAACCGCGTCGACGAGATCATACTGTTCCACCGGCTGCGCCGCTCGGAAATGG GCGCGATCGTCGACATTCAGCTCGAAAGGCTGCGCAAGCTCCTCTCGGATCGCAAGATCACGCTCGAGCTCGAGGACGAT GCCCGCGTTTTCCTGGCGGACAGGGGCTACGATCCGGCCTACGGCGCTCGCCCCCTGAAGCGGGCGATCCAGAAATACGT TCAGGACCCGCTGGCCGAAAAAGTGCTGCAGGGCGAGTTCCCGGATGGCTCGGTGATCAAGGTCGTTGCCGGTTCCGACC GTCTGAACTTCAAGCGCGGGGCAGGGGCGAACAAGGAAGCCGCGTAA Protein sequence : MDIEKYSERVRGFLQSAQTYALAEGHQQFTPEHVLKVLLDDDQGMAASLIERAGGNAREAKVGTAAALAKLPKVTGGNGS VYLSQPLAKVFTAAEDAAKKAGDSFVTVERLLLALAIESSAATASILSKAGVTPTKLNQVINEIRKGRTADSANAEQGFD SLKKYARDLTAEAREGKLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKRLMA LDMGALIAGAKFRGEFEERLKAVLNEVRSEGGEIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATTLDEY RKHVEKDAALARRFQPVMVEEPTVEDTISILRGLKEKYEQHHKVRISDSALVAAAALSNRYITDRFLPDKAIDLMDEAAS RLRMQVDSKPEELDELDRRVIQLKIEREALKKETDVSSKDRLAKLELDLSSLEEEAAALTARWQAEKQKLGQAADLKKQL DEARNELQIAQRKGEFQRAGELAYGVIPNLEKELAEAESQDGASANPMVQEVVTPDNIAHIVSRWTGIPVDKMLEGERDK LLRMEDELAKWVVGQGDAVQAVSRAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDETALMRIDMSEYM EKHSVARLIGAPPGYVGYEEGGALTESVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTMIIMTS NLGAEYLTALGENEDSDAVRDQVMEVVRAAFRPEFLNRVDEIILFHRLRRSEMGAIVDIQLERLRKLLSDRKITLELEDD ARVFLADRGYDPAYGARPLKRAIQKYVQDPLAEKVLQGEFPDGSVIKVVAGSDRLNFKRGAGANKEAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 7e-104 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_386714.1 | ATP-dependent protease | VFG2076 | Protein | 4e-117 | 43 |
| clpB | NP_386714.1 | ATP-dependent protease | VFG2084 | Protein | 1e-104 | 42 |
