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Name : SMa0682 (SMa0682) Accession : NP_435607.4 Strain : Genome accession: NC_003037 Putative virulence/resistance : Virulence Product : decarboxylase (lysine, ornithine, arginine) Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.17 Position : 366403 - 368673 bp Length : 2271 bp Strand : - Note : glimmer prediction Excellent match (e-147) to various basic amino acid decarboxylases (lysine, arginine, ornithine) over entire length. May be in operon with adjacent genes DNA sequence : ATGGAGTTCTACAAGGCATTCCCCATCGCTGTCATCGATGAAGATTACGAGGGTAAAAGCGCGGCCGGGCGGGGCATGCG CAGCCTCGCAGAGGCGATTGAAAAGGAAGGTTATCGGGTCGTTGCAGGGCTCACCTATGAGGATGCACGCCGCCTCGTGA ACGTCTTCAACACCGAGTCCTGCTGGCTGATTTCAGTCGACGGGACGGAATCAAGTACGACGCGCTGGGAGATTTTAGCC GAGCTGCTCGCCGCGAAACGCTCCCGGAACAACCTGCTGCCAATCTTTCTGTTTGGCGACGATACAACGGCGGAAATGGT GCCGGCGCCCGTGCTGCGCCACGCCAATGCCTTTATGCGTCTTTTCGAGGATTCTCCGGAATTCATGGCGCGCGCGATCG TGCGCGCGGCGCAGAATTATCTTGAGAGGCTTCCGCCTCCAATGTTCAAGGCGTTGATGGAATACACGCTTCACGGCGCC TATTCCTGGCACACGCCAGGGCACGGAGGCGGGGTGGCGTTTCGCAAGAGCCCGGTTGGCCAGCTCTTTTATACGTTTTT TGGAGAGAACACATTGAGGTCGGACATTTCTGTGTCCGTCGGCAGCGTTGGTTCGCTCCTCGATCATGTTGGGCCGATTG GCGAGGGTGAGCGCAATGCCGCTCGCATATTTGGTGCGGATGAGACGCTGTTCGTTGTCGGCGGCACCTCGACCGCCAAT AAGATCGTGTGGCAGGGTATGGTCACTCGGAACGACCTCGTCCTCTGCGACCGAAACTGCCATAAGTCTATCCTGCACTC GCTGATTATGACGGGTGCAACGCCGATTTACCTGACGCCCTCACGCAACGGCCTCGGCATCATCGGACCGATTGCGAAGG AGCAGTTTACCCCAGAGGCAATCGCGCACAAGATCGTCGCCAGTCCGTTTGCCAGTGAGACGAACGGTAAAGTGCGCCTG ATGGTAGTGACAAACTCCACCTATGATGGGCTCTGCTACAATGTAGATGGAATCAAATCGGCGCTCGGCGATGCGGTGGA GGTACTGCATTTCGACGAGGCCTGGTTTGCTTACGCCAATTTTCACGAATTCTACGATGGTTATCACGCGATCTCTTCAA CGAAGCCCGCGCGCTCGCAAGAAGCCATCACATTCGCAACCCAGTCCACGCACAAGCTGCTGGCCGCCTTCTCTCAAGCT TCAATGCTTCATGTGCAGCATGCCGTGGCGAAGCAACTCGACATCACACGCTTCAACGAAGCGTTCATGATGCACACATC GACATCGCCGCAATATGGGATCATCGCCTCGTGCGACGTGGCTGCTGCCATGATGGAGCAGCCCGCCGGGCGGGCGCTGG TACAGGAGACCATTGACGAAGCCATGAGTTTCCGCCGAGCCGTCAACGCCGTGCGGACACAGATGCAGGATTCCTGGTGG TTCGAAGTCTGGGAGCCCCCCATCGCGGATCGGGCCCCGAGCGACGCCACGTCGGATTGGCTTCTAAAGCCCGGTGACGC TTGGCATGGTTTCGAAGACCTGGCTGAGAATCACGTTATGGTTGACCCGATCAAGGTCACGATCCTTTCGCCCGGACTCA ATGCGGGCGGAGCGATGCTGGAGCATGGTATTCCGGCTGCAGTCGTCACGAAGTTCCTTTCTTCTCGCCGGATCGAAATC GAGAAAACCGGCCTCTACTCTTTCCTGGTGCTCTTCTCCATGGGGATCACACGGGGCAAGTGGAGCACCCTGATCACCGA GCTCTTGAACTTCAAAGACCTCTATGATGCCAATGCGCCTCTTTCACGCGCCCTTCCCGCCCTCGCGGCAGCCCATCCGG ACGTCTACCGTGCAATGGGCCTTAGAGATCTTTGCGAGAAAATTCACGACGTGTACCGCAGCGATGGCGTGCCGAATGCC CAGCGCGAGATGTACACCGTGCTACCCGAAATGGCACTGCGCCCGGCAGACGCCTACAACCGCCTGGTCAAGGGGTGCGT CGAAAGCGTCGATATCGACGAATTGATCGGCCGGACACTCGCAGTCATGATTGTACCCTATCCTCCGGGCATCCCGCTCA TCATGCCTGGCGAGCGGATCACTGCAGCCACAAGATCGATCCAGGACTATCTCGTCTACGCCCGGAGTTTCGACAGGAAA TTCCCGGGATTTGAGACGGACATCCACGGACTCCGTTTCGTCGCTAACCCGAGTGGACGGAGATATCTCGTGGATTGCAT CGTCGAGGAGGGACAAGATGATACCGCGTGA Protein sequence : MEFYKAFPIAVIDEDYEGKSAAGRGMRSLAEAIEKEGYRVVAGLTYEDARRLVNVFNTESCWLISVDGTESSTTRWEILA ELLAAKRSRNNLLPIFLFGDDTTAEMVPAPVLRHANAFMRLFEDSPEFMARAIVRAAQNYLERLPPPMFKALMEYTLHGA YSWHTPGHGGGVAFRKSPVGQLFYTFFGENTLRSDISVSVGSVGSLLDHVGPIGEGERNAARIFGADETLFVVGGTSTAN KIVWQGMVTRNDLVLCDRNCHKSILHSLIMTGATPIYLTPSRNGLGIIGPIAKEQFTPEAIAHKIVASPFASETNGKVRL MVVTNSTYDGLCYNVDGIKSALGDAVEVLHFDEAWFAYANFHEFYDGYHAISSTKPARSQEAITFATQSTHKLLAAFSQA SMLHVQHAVAKQLDITRFNEAFMMHTSTSPQYGIIASCDVAAAMMEQPAGRALVQETIDEAMSFRRAVNAVRTQMQDSWW FEVWEPPIADRAPSDATSDWLLKPGDAWHGFEDLAENHVMVDPIKVTILSPGLNAGGAMLEHGIPAAVVTKFLSSRRIEI EKTGLYSFLVLFSMGITRGKWSTLITELLNFKDLYDANAPLSRALPALAAAHPDVYRAMGLRDLCEKIHDVYRSDGVPNA QREMYTVLPEMALRPADAYNRLVKGCVESVDIDELIGRTLAVMIVPYPPGIPLIMPGERITAATRSIQDYLVYARSFDRK FPGFETDIHGLRFVANPSGRRYLVDCIVEEGQDDTA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 2e-118 | 44 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 1e-120 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SMa0682 | NP_435607.4 | decarboxylase (lysine, ornithine, arginine) | VFG1670 | Protein | 1e-118 | 44 |
