Gene Information

Name : SMa0444 (SMa0444)
Accession : NP_435478.2
Strain :
Genome accession: NC_003037
Putative virulence/resistance : Unknown
Product : TRm1b transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 236878 - 237708 bp
Length : 831 bp
Strand : -
Note : glimmer prediction; integrase core domain, PF00665; identical to hypothetical protein 2 from R. meliloti ISRm1 (accession S37716)

DNA sequence : 
ATGAAGACCGTTTGCGAAACTTTGGGTGTCGCTCGCTCGAATATCGCCGCGCGTGCCGCAGGCTCCCCTTCCAGAGCCAG
AGGACGCCCGCCACTACCTGATCGCGAGCTGGTGGAGGACATCAAGGCCGTCATCGCCGATATGCCCACCTACGGCTATC
GGCGTGTCCATGCCATCCTGCGTCGGAATGCCCGGAAACTGGGGCGTTCGTGGCCCAATGCCAAGCGCGTCTACCGGGTG
ATGAAGCTGCACAATCTGCTATTGGTGCGCCACACCGGAGCGGTCGATGATCGTCTCCACGAGGGTCAGGTCGCTGTCGA
ACGTTCGAACATCAGATGGTGCTCCGACGGCTTCGAGATCGGCTGCGACAACAAGGAGAAGGTCCGGGTCGCCTTCGCCC
TCGACTGCTGCGACCGTGAAGCAATCGCCCATGTCGCCACCACCGAGGGCATCAAGAGCCAGGACGTGCAGGACCTCGTG
ATCACAGCAGTGGAGAACCGCTTCGGCCGCATCAACATGCTGTCCGAGCCCATCGAATGGCTCACCGACAACGGCTCCTG
CTTTGTTGCCAGGGACACCGCATCCTTGCTCCGCGACATCGGCATGGAACCTTGCACGACACCGGTGCGAAGCCCACAGT
CGAACGGCATGGCCGAGGCGTTCGTGAAAACATTCAAGCGCGATTACGTCTCGGTGAACCCAACCCCCGACGCTGAAACC
GTCATGGCGCAACTGCCGTTCTGGTTCGAGCATTACAACAATCTTCACCCGCACAGTGCTTTAGGATATCAATCGCCGCG
CGAGTTCATCAGTTCGCAATCTCAAACCTGA

Protein sequence : 
MKTVCETLGVARSNIAARAAGSPSRARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILRRNARKLGRSWPNAKRVYRV
MKLHNLLLVRHTGAVDDRLHEGQVAVERSNIRWCSDGFEIGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLV
ITAVENRFGRINMLSEPIEWLTDNGSCFVARDTASLLRDIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVSVNPTPDAET
VMAQLPFWFEHYNNLHPHSALGYQSPREFISSQSQT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 1e-57 57
insD YP_002414033.1 insertion element IS2 transposase InsD Not tested Not named Protein 2e-57 57
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 3e-58 55
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 2e-57 55
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 2e-57 55
unnamed CAC39283.1 hypothetical protein Not tested LPA Protein 8e-60 55
S4061 NP_839230.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 1e-57 55
S3189 NP_838472.2 insertion element IS2 transposase InsD Not tested SHI-1 Protein 7e-57 55
S4050 NP_839218.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 3e-57 55
SF3708 NP_709447.1 IS2 transposase TnpB Not tested SHI-2 Protein 3e-57 55
SF3721 NP_709460.1 IS2 transposase TnpB Not tested SHI-2 Protein 3e-57 55
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 4e-56 54
aec49 AAW51732.1 Aec49 Not tested AGI-3 Protein 2e-56 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SMa0444 NP_435478.2 TRm1b transposase VFG1732 Protein 8e-58 57
SMa0444 NP_435478.2 TRm1b transposase VFG0649 Protein 1e-57 55
SMa0444 NP_435478.2 TRm1b transposase VFG0621 Protein 1e-57 55
SMa0444 NP_435478.2 TRm1b transposase VFG0608 Protein 1e-57 55