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Name : MCA0447 (MCA0447) Accession : YP_112977.1 Strain : Methylococcus capsulatus Bath Genome accession: NC_002977 Putative virulence/resistance : Virulence Product : sigma-54 dependent DNA-binding response regulator Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 459204 - 460145 bp Length : 942 bp Strand : + Note : identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 DNA sequence : ATGTTCGAAGTGCTCATCGGCCGGTCGCCCGGTTTCGAGGCGCTCATCCGCAGCGCGCGGCTGGTGGCTGCGACCGATGT GACCGTCCTCATCGTGGGCGAAACCGGTACCGGCAAGGAACTCCTGGCCCGGGCACTCCAGGGCCACAGCCTGCGCGCCG ACCGGCCTTTCGTCACGCTCAACTGCGCGGCGCTCCCGGCTTCGGTCGCGGAATCCGAGCTGTTTGGCCATCGTCGCGGA GCTTTCACGGGGGCGGTTTCGGATTTCCCCGGCCGGCTCGAGACCGCCGATGGCGGCACCCTGTTCCTGGACGAGATCAA TTCGCTGCCTCTGCCGGTGCAGGCCAAGCTTCTGAGGTTCCTTGATTCCGGGGAAATCCAGCCGGTCGGCGCCCGGGCTC CGCAGAGGGTGGACGTGCGCATCATCGCGGCGACCAATGCCAACCTGGCCGACAAGATCGACAAGGGTGAATTCCGCCGC GACCTCTATTACCGGTTGAGTGTGGTCCCGCTCGAAATCCCTCCCCTGCGCGAACGCGGCGGCGACGTGGAACTGCTGCT CCACCACTTCATGCGTCATTTCGCGCAAACCCATGCCATTCCGCCGGCGGTGTTCGGTCGGGGGGCGGTGCGGCGTCTGA TTGCTTATCCCTGGCCCGGGAACATCCGGGAATTGCGGAACCTCTGTGAACGCCTCGCCATCCTGATGCCTGGCCGGGTG ATCGAGGAGCAGGATCTCCCCGAGGAAGCCCTGCGCGCCCCGCCACAGGCCAGGCCATTGTTCACGCTCCCGGATGAGGG GTTCGAGCTGGAGCGGATGGAAATCGACTTCATCCGCCAGGCGCTGCAGCGGACCCAGGGTAACCGGACCCGGGCCGCCC GGCTGCTCGGCCTCACCCGCGATCAGCTCAACTACCGTATCCAGAAGTACGGCATCGATTGA Protein sequence : MFEVLIGRSPGFEALIRSARLVAATDVTVLIVGETGTGKELLARALQGHSLRADRPFVTLNCAALPASVAESELFGHRRG AFTGAVSDFPGRLETADGGTLFLDEINSLPLPVQAKLLRFLDSGEIQPVGARAPQRVDVRIIAATNANLADKIDKGEFRR DLYYRLSVVPLEIPPLRERGGDVELLLHHFMRHFAQTHAIPPAVFGRGAVRRLIAYPWPGNIRELRNLCERLAILMPGRV IEEQDLPEEALRAPPQARPLFTLPDEGFELERMEIDFIRQALQRTQGNRTRAARLLGLTRDQLNYRIQKYGID |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 3e-39 | 43 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 3e-39 | 43 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 5e-40 | 42 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 5e-40 | 42 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 4e-38 | 41 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 4e-38 | 41 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 9e-39 | 41 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 9e-39 | 41 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 2e-37 | 41 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 6e-38 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| MCA0447 | YP_112977.1 | sigma-54 dependent DNA-binding response regulator | VFG1214 | Protein | 2e-48 | 43 |
