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Name : lpdA (MCA3002) Accession : YP_115390.1 Strain : Methylococcus capsulatus Bath Genome accession: NC_002977 Putative virulence/resistance : Unknown Product : pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1249 EC number : 1.8.1.4 Position : 3177706 - 3179127 bp Length : 1422 bp Strand : + Note : identified by similarity to SP:P00391; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350 DNA sequence : ATGGCTGAACCCAAGACGATACACGCCGATGTCCTGGTGCTGGGCGGTGGGCCTGGCGGCTACACCGCGGCTTTCCGCGC GGCGGATCTGGGCAGGCAGGTGGTCCTGGTCGAACGCTACCCGACCCTGGGGGGCGTCTGTCTCAATGTCGGCTGCATCC CCTCCAAGGCTTTGCTGCACGTCGCCCAGATCATTCACGAGGCACGGGAAGCCGGCGAGTTCGGCCTCCGGTTCGGCGCG CCCGAGATCGATCTGGACCAGATCCGTGGCTTCAAGGACAAGGTGGTCAAGACTTTGACCGGAGGGCTCGAGACCCTCGC CAGGCAGCGCAAGGTGACCGTGGTCCAGGGCACCGGCCGCTTCACCGGCGAGCACGGCATGCAGGTGGAAACGACCGACG GGCCGGTCACGGTCGGCTTCGACCATGCCATCATCGCCGCAGGCTCCCGGGCGGTGAAGATTCCAGACTTCCCTCACGAC GATCCGCGCCTGATGGATTCGACCGACGCCCTGGCGCTGCAGGAAGTCCCCAAGCGCCTCCTGATCGTTGGCGGCGGCAT CATCGGCCTGGAAATGGCCACGGTGTATCACGCCCTGGGTGCCGGTATCACCGTGGTGGAACTGATGGACCAGCTGATCC CGGGCTGCGATGCCGATCTGGTGCGCCCGCTGCACCAGCACATCAAGAAGCAGTACGAGAACATCTATCTCAAGACCCGC GTCAGCCGGATCGAACCCGAAGCCGCCGGCCTCAAGGTGTTCTTCGAAGGGGAGGGCGCGCCCGAGTCCGATCTGTTCGA CCGCGTGCTGGTCGCGGTGGGGCGCGCCCCGAATGGCGCCCTGATCGGGGCGGAAAATGCCGGTGTCCACGTCGATGCCA AAGGCTTCATCCCCGTCGACGAGCACCAGCGCACCAACGTCCCTCATATCTACGCCATCGGCGACATCGTCGGCAACCCC ATGCTGGCCCACAAGGCCACCCACGAGGCCAAGGTCGCCGCCGAAGTCATCGCCGGCAAACCGTCCGCCTTCCAGGCATT GACCATCCCATCGGTGGCCTATACCGATCCGGAAGTGGCCTGGATGGGTGTCACCGAAGCCCAGGCCAAAGCCCAGGGCA TCGAATACGAAAAAGCCGTGTTCCCGTGGGCCGCGAGCGGTCGCGCCCTGGGCATCGGCCGCAAGGAGGGCGCCACCAAG CTGCTCTGCGACAAGACCACCAAACGGGTGATCGGTGCCGGCATCGTCGGCCCCCATGCCGGCGAGCTCATCGCCGAAGC CGTGCTGGCCATGGAAATGGGCGCCGATGCGGAAGACATCGGCCTCACCGTCCATGCCCACCCGACCTTGTCGGAAACCT TCGCCTTCGCCGCGGAAATGATCGAAGGCACGATCACCGATCTCTATATCCGCAAGCGCTGA Protein sequence : MAEPKTIHADVLVLGGGPGGYTAAFRAADLGRQVVLVERYPTLGGVCLNVGCIPSKALLHVAQIIHEAREAGEFGLRFGA PEIDLDQIRGFKDKVVKTLTGGLETLARQRKVTVVQGTGRFTGEHGMQVETTDGPVTVGFDHAIIAAGSRAVKIPDFPHD DPRLMDSTDALALQEVPKRLLIVGGGIIGLEMATVYHALGAGITVVELMDQLIPGCDADLVRPLHQHIKKQYENIYLKTR VSRIEPEAAGLKVFFEGEGAPESDLFDRVLVAVGRAPNGALIGAENAGVHVDAKGFIPVDEHQRTNVPHIYAIGDIVGNP MLAHKATHEAKVAAEVIAGKPSAFQALTIPSVAYTDPEVAWMGVTEAQAKAQGIEYEKAVFPWAASGRALGIGRKEGATK LLCDKTTKRVIGAGIVGPHAGELIAEAVLAMEMGADAEDIGLTVHAHPTLSETFAFAAEMIEGTITDLYIRKR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SE0077 | NP_763632.1 | dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3 | Not tested | SCCpbp4 | Protein | 3e-73 | 42 |
