Gene Information

Name : MCA2330 (MCA2330)
Accession : YP_114746.1
Strain : Methylococcus capsulatus Bath
Genome accession: NC_002977
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2525010 - 2525696 bp
Length : 687 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGAGAATCCTCCTGGTCGAAGACGACCGGAAAGCAGCCGGACTTCTGACACGCGGACTCGGCGAGGAGGGTTTCCGCGT
CGACACCGCCCACTCCGCGGAAGACACCGAGCAGAAGAACCTCCACACCGGGTACGGGCTGATCATCCTCGACTGGAACC
TGCCCGGCAAAGACGGGCTGACTTTCTGTGAGGAACTTCGGAAGCGGGAGATACGCACGCCGGTTTTGATGCTCACCGCC
CGCGATGCGCTGACGGACAGGGTGAGGGGACTCGACACCGGCGCCGACGACTATCTCACCAAGCCCTTCGCCTTCGAGGA
ACTGCTCGCGCGCGTTCGTGCCCTACTGCGGCGGGCGGAACAAGCCCGTCCGGCGATGCTGTCGGTCGCCGACCTCGTCC
TCGACCCGCGCAGTCGACGCGTCACGCGGAGCGGACGCCCGCTCTCCCTCACCCCCAAGGAATACGCCATCCTGGAACTC
CTGTTGCGACGGGCCGGCGAAGTCGTATCCCGCACCCAGTTGGCCGAGGAGATATGGAGAACCGGTCTCATCGCTCTGGA
CAATCTGATCGATGTTCACATCAGCAATCTACGCCGTAAGGTGGATCCGCCCGGCGTTCCGCCTCTCATTCGAACGGTGA
GAGGCTGCGGCTTCAGCCTGGCGGCGGCTGACAGCGAATCGCCGTGA

Protein sequence : 
MRILLVEDDRKAAGLLTRGLGEEGFRVDTAHSAEDTEQKNLHTGYGLIILDWNLPGKDGLTFCEELRKREIRTPVLMLTA
RDALTDRVRGLDTGADDYLTKPFAFEELLARVRALLRRAEQARPAMLSVADLVLDPRSRRVTRSGRPLSLTPKEYAILEL
LLRRAGEVVSRTQLAEEIWRTGLIALDNLIDVHISNLRRKVDPPGVPPLIRTVRGCGFSLAAADSESP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-31 47
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-30 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MCA2330 YP_114746.1 DNA-binding response regulator BAC0125 Protein 3e-35 48
MCA2330 YP_114746.1 DNA-binding response regulator BAC0197 Protein 4e-34 47
MCA2330 YP_114746.1 DNA-binding response regulator BAC0308 Protein 3e-32 45
MCA2330 YP_114746.1 DNA-binding response regulator BAC0111 Protein 1e-34 44
MCA2330 YP_114746.1 DNA-binding response regulator BAC0487 Protein 8e-26 43
MCA2330 YP_114746.1 DNA-binding response regulator BAC0083 Protein 3e-33 43
MCA2330 YP_114746.1 DNA-binding response regulator BAC0638 Protein 8e-25 43
MCA2330 YP_114746.1 DNA-binding response regulator BAC0347 Protein 3e-29 42
MCA2330 YP_114746.1 DNA-binding response regulator CP000675.2.gene1535. Protein 2e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MCA2330 YP_114746.1 DNA-binding response regulator VFG0596 Protein 1e-31 47
MCA2330 YP_114746.1 DNA-binding response regulator VFG0473 Protein 8e-28 46
MCA2330 YP_114746.1 DNA-binding response regulator VFG1390 Protein 2e-30 42