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Name : pilB (MCA2096) Accession : YP_114526.1 Strain : Methylococcus capsulatus Bath Genome accession: NC_002977 Putative virulence/resistance : Virulence Product : type IV pilus assembly protein PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2252675 - 2254390 bp Length : 1716 bp Strand : - Note : identified by similarity to SP:P22608; match to protein family HMM PF00437; match to protein family HMM PF05157 DNA sequence : ATGGCGGCGGTTTCCGGCGTCCAGCAGCTGAGCGGTCTGGCGAAAAGCCTGGTCAAGGCCCAGTTGCTTTCGGAGGCGGA CGCCCAGGCGTACTTCGAGGATGCGCGCAGGAAGAACACCCCTTTCGTCAGCTATCTCGTTGCCAACAAGATCCTGGACG GTCTCCAGATCGCCCAGGTCGCCCACCAGGAGTTCGGGCTGCCCCTGCTCGATCTGGACGCAGTCGTCTTCGACATTCCC CCCACGCAGTGGGTCGGCGAGAAGCTGATACGCCGCCATCACATCCTGCCCTTGCTGCGACGGGGGAATCATCTCTTCGT CGCGGTCTCGGATCCGACCAATTTCCTGGGACTGGATGAAATCACTTTCCAGACCCGTCTCGTTACCGACTGTGTCCTGG TCGAGGAGAACAAGCTTTCGCGCTGCATCGAGGCGGTCCTGGATGCGGCGGATACCAGCCTGAAGCAGCTGCTCGAAGAG GATCTGGACAGTCTGCAGATCACCGCCGGGGACGACGAAGGCCCGCACGCCGAGCCGGAAATCTCCGGTATCGACGATGC GCCGATCGTGCGCTTCGTCAACCGCCTTCTGCTGGACGCGGTGCGGAAGGGGGCCTCGGACATCCATATCGAGCCTTACG AAAAGTTCCTGCGCATCCGCTTCCGGCACGACGGCATCCTGCATGAGGTGGCGAATCCGCCGCCTGCGCTGGGCGTCAAG ATCTGCGCTCGCATCAAAGTGATGTCGCGCATGGATATCGCGGAACACCGCATTCCCCAGGACGGACGCATCAAGATGAC GCTGTCGCGCTCCCGCGCCATCGATTTCCGCGTCAATACCTGTCCGACGCTGTTCGGGGAAAAGATCGTGCTGCGTATCC TCGATCCGAGCTCGGCCCAGATCGGCGTCGAAATGCTGGGATTCGAGCCGGAACAGCGGGACAATTTCCTGCGTGCGCTG GAAAAGCCCTATGGCATGATCCTGGTTACCGGCCCCACCGGCAGCGGTAAAACCGTTACCCTCTACACCGGTCTGAACCT CCTCAACCGCGTCGAAGCGAACATCTCCACGGTGGAGGACCCGGTCGAGATCACAGTGCCGGGGATCAACCAGGTCAATG TCAATTACAAGACCGGCCTCACTTTCGCCGAGGCGCTGCGGGCGTTTCTGCGCCAGGACCCCGACATCATCATGGTGGGC GAGATCCGCGACCTGGAAACCGCCGAAATCGCCGTCAAGGCGGCCCAGACCGGGCATCTGGTGCTGTCGACCCTGCACAC CAACGATGCCCCGCAGACCTTGAACCGTCTGATGCAGATGGGGATCCCCGCGTTCAACATCGCCTCCTCCGTGCTCCTGA TCATGGCGCAGCGGCTGGCCCGCCGGCTTTGTCCGCGGTGCAAGCGGGAGGAGAAAGTGCCGCCCGAGGTCCTGCTCGCC TCCGGCTTCCGGGAGGAAGACATCGGCAATTTCACGCTGTTCGGGCCGGCGGGCTGCGATCAATGTGTGAAGGGCTACAA GGGGCGGGTCGGCATTTACCAGGTCATGCCGATTTCGGAAGAAATCAACCGCATCATCCTGGAGGGAGGGAACGTGATGG CCCTGACCGAGCAGGCGCATGCGGAAGGTATCGCGGATCTGAGGGAGTCTGGCTTGAAGAAGGTGAAGGCGGGTATCACC AGCCTCGAGGAAATCGACCGCGTGACGAGGGACTGA Protein sequence : MAAVSGVQQLSGLAKSLVKAQLLSEADAQAYFEDARRKNTPFVSYLVANKILDGLQIAQVAHQEFGLPLLDLDAVVFDIP PTQWVGEKLIRRHHILPLLRRGNHLFVAVSDPTNFLGLDEITFQTRLVTDCVLVEENKLSRCIEAVLDAADTSLKQLLEE DLDSLQITAGDDEGPHAEPEISGIDDAPIVRFVNRLLLDAVRKGASDIHIEPYEKFLRIRFRHDGILHEVANPPPALGVK ICARIKVMSRMDIAEHRIPQDGRIKMTLSRSRAIDFRVNTCPTLFGEKIVLRILDPSSAQIGVEMLGFEPEQRDNFLRAL EKPYGMILVTGPTGSGKTVTLYTGLNLLNRVEANISTVEDPVEITVPGINQVNVNYKTGLTFAEALRAFLRQDPDIIMVG EIRDLETAEIAVKAAQTGHLVLSTLHTNDAPQTLNRLMQMGIPAFNIASSVLLIMAQRLARRLCPRCKREEKVPPEVLLA SGFREEDIGNFTLFGPAGCDQCVKGYKGRVGIYQVMPISEEINRIILEGGNVMALTEQAHAEGIADLRESGLKKVKAGIT SLEEIDRVTRD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-83 | 46 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-83 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_114526.1 | type IV pilus assembly protein PilB | VFG1880 | Protein | 7e-150 | 57 |
| pilB | YP_114526.1 | type IV pilus assembly protein PilB | VFG0112 | Protein | 1e-154 | 56 |
| pilB | YP_114526.1 | type IV pilus assembly protein PilB | VFG0233 | Protein | 1e-111 | 47 |
| pilB | YP_114526.1 | type IV pilus assembly protein PilB | VFG0182 | Protein | 4e-82 | 47 |
| pilB | YP_114526.1 | type IV pilus assembly protein PilB | VFG2048 | Protein | 4e-84 | 46 |
| pilB | YP_114526.1 | type IV pilus assembly protein PilB | VFG1876 | Protein | 9e-79 | 45 |
