Gene Information

Name : MCA1939 (MCA1939)
Accession : YP_114372.1
Strain : Methylococcus capsulatus Bath
Genome accession: NC_002977
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2088244 - 2088909 bp
Length : 666 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCGTTTGCTGCTTGCCGAAGACGATCGGATGATCGGCCAGGCCCTTTGCGAGGGATTGAACCAAGAGGGCTTCGTCGT
CGACTGGGTCCAGGACGGACATCAGGCTGAACTCGCCCTGAAGGTTGCCGAGGCCGACTATGCCTTGCTTCTGCTCGACC
TGGGGCTGCCGCGGCTGTCGGGTCTGGATCTGCTTACCGACCTTCGGCGCAGGGGGGCCGGCATCCCGGTCCTCATTCTC
ACCGCGCGCGATTCCCTGTCAGACCGGGTACTGGGGCTCAACAGCGGTGCCGACGATTACCTTGTGAAACCCTTCGAGCT
CGATGAGCTCGTGGCCCGCATCCATGCCCTGGTCCGGCGGGCGGCGGGACGCGCCGAACCGGTCGTCGAACACGGTCCGT
TGCGGTTACTTCCGGTGAAGCGGGAATGCTGGTTGCGGGGTGAGCCGGTCGAGCTGTCCGCCCGTGAATTCGATCTGCTC
TACGCCCTCCTGGAAAAACCGGGCGCGGTGCTGTCCCGCACCCGGCTGGAGGAGCGCGTTTATGGTTGGGGACAGGAAGT
GGTAAGCAATGCCATCGATGTCCACATCCACCATCTCCGCAAGAAGCTGGGTCCGGGATTCATCGTCAATGTCCGCGGCG
TGGGTTATCGGGTGGCTCAAGCATGA

Protein sequence : 
MRLLLAEDDRMIGQALCEGLNQEGFVVDWVQDGHQAELALKVAEADYALLLLDLGLPRLSGLDLLTDLRRRGAGIPVLIL
TARDSLSDRVLGLNSGADDYLVKPFELDELVARIHALVRRAAGRAEPVVEHGPLRLLPVKRECWLRGEPVELSAREFDLL
YALLEKPGAVLSRTRLEERVYGWGQEVVSNAIDVHIHHLRKKLGPGFIVNVRGVGYRVAQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-35 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MCA1939 YP_114372.1 DNA-binding response regulator CP001918.1.gene5135. Protein 9e-21 44
MCA1939 YP_114372.1 DNA-binding response regulator CP004022.1.gene3215. Protein 2e-21 43
MCA1939 YP_114372.1 DNA-binding response regulator NC_002516.2.879194.p Protein 6e-23 42
MCA1939 YP_114372.1 DNA-binding response regulator BAC0083 Protein 4e-22 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MCA1939 YP_114372.1 DNA-binding response regulator VFG1390 Protein 8e-22 43