|
Name : gabD (MCA1756) Accession : YP_114195.1 Strain : Methylococcus capsulatus Bath Genome accession: NC_002977 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 1876907 - 1878382 bp Length : 1476 bp Strand : + Note : identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780 DNA sequence : ATGAGCCATGAACTCCGACTCGACCAGCCCGGCCTGCTGCGTACCCGGTGCCTGATCGACGGCCAATGGGTCGACGCCGA CCACTCAAAGACTTTTTCCGTGACCGATCCGGCCACCGGCCGGGCTCTGGCCGATGTCCCTGCCATGGGCGCCGCCGAGA CCATGCGGGCGATCGCCGCCGCGGAACACGCCTGGACCGGCTGGCGCGGCAAGACCGCCAAGGAGCGCGCCGCGGTCTTG CGCCGCTGGTACGAGCTGATCCTGAGCCATACCGAAGACCTCGCTCGCATCCTCACCGCCGAGCAGGGCAAGCCACTGAC CGAGGCCCGCAACGAGATCGGCTACGCCGCCGGCTTCGTCGAATGGTTCGCGGAGGAGGCTGGACGCGCCTACGGCGAAA CCATCCCCTCCCCCGTCCCGGACAAGCGGCTGCTGGTCATCCGCCAGCCCATCGGTGTATGCGCAGCCATCACGCCCTGG AATTTCCCGGCGGCGATGATCACCCGCAAGATCGCGCCGGCCCTGGCCGCCGGTTGCACCGTAGTGGTGAAACCCGCCGA GCAGACGCCGCTGACCGCCCTCGCCCTGGCCGACCTAGCGGTGCAGGCGGGCTTTCCGCCCGGCGTGATCAACGTCGTGA CCGGCGATCCGGAAGCGATCGGCGGCGAACTGACTTCCAATCCCTTGATCCGCAAACTCTCCTTCACTGGCTCGACCGAG GTCGGACGCCTCTTGATGGCGCAATGCGCCGCGACGGTGAAGAAAATCTCGCTGGAGCTGGGCGGCAACGCGCCCTTCAT CGTGTTCGAGGACGCCGATCTGGATGCCGCGGTCGAGGGCGCCTTGCTGTCGAAGTACCGCAACACCGGCCAGACCTGCG TCTGCACCAACCGCTTCCTGATCCAGGATTCGATCTACGACGCCTTCGCCGAACGCCTCGCGGCCAAGGTGCGCAGGCTC GAGGTCGGCAACGGCCTGGACGAGGGCGTCGTCCAAGGACCGCTCATCGACGAGCAGGCGCTGGCCAAGGTGGAGCGACA TATCGCCGACGCCCTGGACAGAGGCGCCCGGGTGCTGGCGGGCGGCGGACGGCACCCCCTGGGCGGACGGTTTTTCCAGC CCACGGTGCTCGTCGATGTCACGCCAGAGATGCTGTGCACGCGCGAGGAAACTTTCGGGCCGGTGGCGCCATTGCTGCGC TTCGGTTCCGAGGAAGAGGCCCTCGCAATCGCCAACGCCACCGAGTATGGACTCGCCGCCTATTTCTACACCCGCGACCT GGCCCGCGCCTTCCGCGTCGGCGAAGCACTGGAATACGGCATGGTCGGCATCAACACCGGCATGCTCTCCTATGACGTCG CACCCTTCGGCGGCGTCAAGCAGTCCGGCATCGGCCGGGAAGGTTCGCACCATGGCATGGACGAATACCTGGAACTCAAA TACCTCTGTCTAGGCGGGATGGCGCCATCCGCCTGA Protein sequence : MSHELRLDQPGLLRTRCLIDGQWVDADHSKTFSVTDPATGRALADVPAMGAAETMRAIAAAEHAWTGWRGKTAKERAAVL RRWYELILSHTEDLARILTAEQGKPLTEARNEIGYAAGFVEWFAEEAGRAYGETIPSPVPDKRLLVIRQPIGVCAAITPW NFPAAMITRKIAPALAAGCTVVVKPAEQTPLTALALADLAVQAGFPPGVINVVTGDPEAIGGELTSNPLIRKLSFTGSTE VGRLLMAQCAATVKKISLELGGNAPFIVFEDADLDAAVEGALLSKYRNTGQTCVCTNRFLIQDSIYDAFAERLAAKVRRL EVGNGLDEGVVQGPLIDEQALAKVERHIADALDRGARVLAGGGRHPLGGRFFQPTVLVDVTPEMLCTREETFGPVAPLLR FGSEEEALAIANATEYGLAAYFYTRDLARAFRVGEALEYGMVGINTGMLSYDVAPFGGVKQSGIGREGSHHGMDEYLELK YLCLGGMAPSA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 3e-150 | 63 |
| hpaE | AAO17179.1 | HpaE | Not tested | tcd island | Protein | 2e-64 | 41 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 1e-80 | 41 |
