|
Name : dnaB (MCA1735) Accession : YP_114174.1 Strain : Methylococcus capsulatus Bath Genome accession: NC_002977 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 1851288 - 1852673 bp Length : 1386 bp Strand : - Note : identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 DNA sequence : ATGTCCGAATACGCCCGATCGATCGACAAGCGCGTGGAAGCGCTCAAGATCCCCCCCCATTCGATCCAGGCCGAGCAGGC GGTGCTGGGCGGCTTGCTGCTCGACAACCAGACCTGGGACGTCGTCGCCGACCGCATCGTCGAGGAAGACTTCTACCGGC GCGACCATCGCCTGATTTTCCGTGCGATCCGCCAGCTTTCCGAGCGGCAGGCGCCGTTCGACGTCGTGACCCTGTCGGAA GTACTGGAAAAGACGGGAGAGCTCGAAGAAGCCGGCGGCCTTGCCTATCTCGCCGTGCTGGCGCGGGAAACGCCCAGCGC CGCCAACATTGCCGCCTATGCCGACATCGTGCGCGAGCGCGCCGTGTTGCGCCAGCTCATCCATGTGGGTACCGAAATCG CCGATTCGGCCTATCAGCCCGAAGGGCGCGGCATGAGCGATCTGCTCGAACAGGCCGAGCAGCGCGTGTTCCAGATCGCC GACCAGCGTCAGCGCGGCAGCGCCGGTTTCAAGCCGATCAAGAGCCTGCTGGCCGCCGCCGTCGATCGCATCGAGATGCT GTTCCACAAGGAGGGGCACATTACCGGCGCAAGCACGGGGTTCACCGATTTCGACGACATGACTTCGGGTTTGCAGCCGT CCGACCTCATCATCATCGCCGGTCGGCCGTCCATGGGCAAAACCACCTTCGCGATGAACATCGCCGAGAACGTCGCGATC AAAGAAAGGCTGCCGGTCGCCGTGTTCAGCATGGAAATGCCTGGTGAGCAGCTGGCCATGAGGATGATGTCTTCACTCGG CCGCATCGACCAGCACCGGGTCCGCACCGGCAAACTGGAGGACGACGAATGGCCCCGCATGACCTCCGCCATCAACATCC TGGCCGAAACCAGACTTTTCATCGACGATACACCGGCTTTGTCTCCCACCGAAGTCCGCGCCCGCTGCCGCCGGTTGGCG CGGGAGAACGGCCAGCTCGGACTGGTGGTGCTGGACTATCTGCAGCTCATGCAATGTTCGGGCGGCGAGAACCGGGTTGC CGAAATTTCGGAAATTTCCCGTTCGCTCAAGGCGCTGGCCAAGGAGCTGAACGTGCCTGTGATAGCCCTGTCCCAGCTCA ACCGCAACCTTGAGCAACGCCCCAACAAGCGACCGGTACCGTCCGATTTGCGCGAATCGGGCTCGATCGAACAGGACGCC GATCTCATTGTGTTCATCTATCGCGACGAGGTCTACCATCCCGACAGCGCCGACAAGGGCACGGCGGAAATCATCATCGC CAAGCAGCGTAACGGTCCGATCGGTACGGTGAGGATGACCTTCCTGGGCCAGTACACGCGTTTCGAGAACTTCATCGCCG ATCCCTATTCCAGCGAGGGATACTAA Protein sequence : MSEYARSIDKRVEALKIPPHSIQAEQAVLGGLLLDNQTWDVVADRIVEEDFYRRDHRLIFRAIRQLSERQAPFDVVTLSE VLEKTGELEEAGGLAYLAVLARETPSAANIAAYADIVRERAVLRQLIHVGTEIADSAYQPEGRGMSDLLEQAEQRVFQIA DQRQRGSAGFKPIKSLLAAAVDRIEMLFHKEGHITGASTGFTDFDDMTSGLQPSDLIIIAGRPSMGKTTFAMNIAENVAI KERLPVAVFSMEMPGEQLAMRMMSSLGRIDQHRVRTGKLEDDEWPRMTSAINILAETRLFIDDTPALSPTEVRARCRRLA RENGQLGLVVLDYLQLMQCSGGENRVAEISEISRSLKALAKELNVPVIALSQLNRNLEQRPNKRPVPSDLRESGSIEQDA DLIVFIYRDEVYHPDSADKGTAEIIIAKQRNGPIGTVRMTFLGQYTRFENFIADPYSSEGY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 1e-114 | 53 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 3e-100 | 50 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 1e-96 | 50 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 5e-100 | 49 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 2e-100 | 49 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 1e-99 | 47 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-89 | 46 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-89 | 46 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 7e-75 | 45 |
