Gene Information

Name : dnaB (MCA1735)
Accession : YP_114174.1
Strain : Methylococcus capsulatus Bath
Genome accession: NC_002977
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 1851288 - 1852673 bp
Length : 1386 bp
Strand : -
Note : identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665

DNA sequence :
ATGTCCGAATACGCCCGATCGATCGACAAGCGCGTGGAAGCGCTCAAGATCCCCCCCCATTCGATCCAGGCCGAGCAGGC
GGTGCTGGGCGGCTTGCTGCTCGACAACCAGACCTGGGACGTCGTCGCCGACCGCATCGTCGAGGAAGACTTCTACCGGC
GCGACCATCGCCTGATTTTCCGTGCGATCCGCCAGCTTTCCGAGCGGCAGGCGCCGTTCGACGTCGTGACCCTGTCGGAA
GTACTGGAAAAGACGGGAGAGCTCGAAGAAGCCGGCGGCCTTGCCTATCTCGCCGTGCTGGCGCGGGAAACGCCCAGCGC
CGCCAACATTGCCGCCTATGCCGACATCGTGCGCGAGCGCGCCGTGTTGCGCCAGCTCATCCATGTGGGTACCGAAATCG
CCGATTCGGCCTATCAGCCCGAAGGGCGCGGCATGAGCGATCTGCTCGAACAGGCCGAGCAGCGCGTGTTCCAGATCGCC
GACCAGCGTCAGCGCGGCAGCGCCGGTTTCAAGCCGATCAAGAGCCTGCTGGCCGCCGCCGTCGATCGCATCGAGATGCT
GTTCCACAAGGAGGGGCACATTACCGGCGCAAGCACGGGGTTCACCGATTTCGACGACATGACTTCGGGTTTGCAGCCGT
CCGACCTCATCATCATCGCCGGTCGGCCGTCCATGGGCAAAACCACCTTCGCGATGAACATCGCCGAGAACGTCGCGATC
AAAGAAAGGCTGCCGGTCGCCGTGTTCAGCATGGAAATGCCTGGTGAGCAGCTGGCCATGAGGATGATGTCTTCACTCGG
CCGCATCGACCAGCACCGGGTCCGCACCGGCAAACTGGAGGACGACGAATGGCCCCGCATGACCTCCGCCATCAACATCC
TGGCCGAAACCAGACTTTTCATCGACGATACACCGGCTTTGTCTCCCACCGAAGTCCGCGCCCGCTGCCGCCGGTTGGCG
CGGGAGAACGGCCAGCTCGGACTGGTGGTGCTGGACTATCTGCAGCTCATGCAATGTTCGGGCGGCGAGAACCGGGTTGC
CGAAATTTCGGAAATTTCCCGTTCGCTCAAGGCGCTGGCCAAGGAGCTGAACGTGCCTGTGATAGCCCTGTCCCAGCTCA
ACCGCAACCTTGAGCAACGCCCCAACAAGCGACCGGTACCGTCCGATTTGCGCGAATCGGGCTCGATCGAACAGGACGCC
GATCTCATTGTGTTCATCTATCGCGACGAGGTCTACCATCCCGACAGCGCCGACAAGGGCACGGCGGAAATCATCATCGC
CAAGCAGCGTAACGGTCCGATCGGTACGGTGAGGATGACCTTCCTGGGCCAGTACACGCGTTTCGAGAACTTCATCGCCG
ATCCCTATTCCAGCGAGGGATACTAA

Protein sequence :
MSEYARSIDKRVEALKIPPHSIQAEQAVLGGLLLDNQTWDVVADRIVEEDFYRRDHRLIFRAIRQLSERQAPFDVVTLSE
VLEKTGELEEAGGLAYLAVLARETPSAANIAAYADIVRERAVLRQLIHVGTEIADSAYQPEGRGMSDLLEQAEQRVFQIA
DQRQRGSAGFKPIKSLLAAAVDRIEMLFHKEGHITGASTGFTDFDDMTSGLQPSDLIIIAGRPSMGKTTFAMNIAENVAI
KERLPVAVFSMEMPGEQLAMRMMSSLGRIDQHRVRTGKLEDDEWPRMTSAINILAETRLFIDDTPALSPTEVRARCRRLA
RENGQLGLVVLDYLQLMQCSGGENRVAEISEISRSLKALAKELNVPVIALSQLNRNLEQRPNKRPVPSDLRESGSIEQDA
DLIVFIYRDEVYHPDSADKGTAEIIIAKQRNGPIGTVRMTFLGQYTRFENFIADPYSSEGY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 1e-114 53
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 3e-100 50
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 1e-96 50
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 2e-100 49
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 5e-100 49
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-99 47
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 1e-89 46
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 1e-89 46
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 7e-75 45