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Name : MCA1102 (MCA1102) Accession : YP_113572.1 Strain : Methylococcus capsulatus Bath Genome accession: NC_002977 Putative virulence/resistance : Virulence Product : sigma-54 dependent transcriptional regulator Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 1157365 - 1158564 bp Length : 1200 bp Strand : - Note : identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 DNA sequence : GTGAGCTACTGGAGTTCGGCTGCCGAGCAGCTGACGGGCCACACGGGTGAATTTGCGACCGGCGAATCCATCGCCCGGCT GCTGCCCGGCTATGGCCCCCCTCGAGCTGACGACGGCAGAGGCGAGGACGAAATCCGGGTCGAGCGGGCGGATGGCTCGG CGCTGCTGTTGCGACGCCGGTACCATCCCCTCCGGGACCGGGAAGGGGCCGCCCGGGGCCGCCTGGAAGTACTCACCGCG ATCGAAACCATCGGTACCCCTCTGGCGGAAGCCGATGTCGAGATCTTGCATGGACTGCTCACGCGCGAACCGGCGATGAA ACAGGTGTTCCGTCTCATCCGCAATGTCGCGGAAACCGAGGCCACGGTATTGGTCCGCGGCGAATCGGGCACCGGCAAAG AACTGGTCGCCCGCGCCGTGCATGCCGAGAGTCACCGCGCCAGGGAGCCGTTTCTCGCGGTCAATTGTGCCGCGCTGGCA CCCTCGCTCCTGGAAAGCGAACTGTTCGGGCATGTCCGCGGCGCGTTTACCGGCGCCGTGCGCAGCCATGCCGGGCTGTT CCAGCGCGCCGACGGCGGCACCTTGTTCCTCGATGAAGTCGCCGAACTGCCGCTTGAGCTGCAGGCCAAGCTGCTGCGCG TGCTTCAGGAACGAAGCTTCGTTCCGGTCGGTGGCGACCGCATGCTCAGCGTGGATGTAAGGATCGTGGCAGCGACCCAT CGCTCGCTGCGGGATGCGGTACGCGAGGGCCGCTTCCGCGAGGATCTGATGTACCGTCTGCGGGTAGTCCCCCTCTTCCT GCCACCCTTGCGCGAGCGCCGCCGCGACATCGGCCTGCTGCTCTGGCATTTCATCGAACGGCACAATGCCCGCGGCCTGC GCCGCATCGTCCGCATCGACCCCGATGCCATGCGCCGGCTGCTCGACCATGCCTGGCCGGGTAATGTGCGCGAATTGCAG AACGTGGTGGAATACGCCTTCGCCGTGGGGCGGGGGGAGGTGCTGGAACTCGATGATCTGCCGCCCGAATTCCGCGACGA GCGCGCCGGGCCGCAAACGTCCATGGAAGCCGTGCCGGATGAGGCCGATCGCATCCGCACGGCGCTGCGGCAATCCGGCG GGCGCATCGACCAGGCCGCCCGGCTGCTGCAGATGAGCCGGGCGACGCTATGGCGCAAAAGGAAGAAGCTGGGCGTGTGA Protein sequence : MSYWSSAAEQLTGHTGEFATGESIARLLPGYGPPRADDGRGEDEIRVERADGSALLLRRRYHPLRDREGAARGRLEVLTA IETIGTPLAEADVEILHGLLTREPAMKQVFRLIRNVAETEATVLVRGESGTGKELVARAVHAESHRAREPFLAVNCAALA PSLLESELFGHVRGAFTGAVRSHAGLFQRADGGTLFLDEVAELPLELQAKLLRVLQERSFVPVGGDRMLSVDVRIVAATH RSLRDAVREGRFREDLMYRLRVVPLFLPPLRERRRDIGLLLWHFIERHNARGLRRIVRIDPDAMRRLLDHAWPGNVRELQ NVVEYAFAVGRGEVLELDDLPPEFRDERAGPQTSMEAVPDEADRIRTALRQSGGRIDQAARLLQMSRATLWRKRKKLGV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 1e-31 | 42 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 1e-31 | 42 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 2e-29 | 41 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 2e-29 | 41 |
