Gene Information

Name : SERP0306 (SERP0306)
Accession : YP_187902.1
Strain : Staphylococcus epidermidis RP62A
Genome accession: NC_002976
Putative virulence/resistance : Virulence
Product : iron ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 309129 - 309926 bp
Length : 798 bp
Strand : +
Note : identified by similarity to EGAD:37683; match to protein family HMM PF00005

DNA sequence : 
ATGAGTCGTTTAAGTGGTGAACAAGTGAAAATTGGCTACGGTGATTCTACGATTATTAATAATTTGGATGTCGCAATTCC
TGATGGAAAGGTTACTTCTATTATTGGACCTAACGGGTGTGGGAAATCAACTTTATTGAAAGCGTTATCTAGACTATTGT
CGATTAAAGAAGGTAAAATTAATTTGGATGGTAAGAGTATTCATGCCACATCCACGAAAGAAATAGCTAAAAAAATAGCA
ATTTTACCACAATCACCAGAGGTCCCAGATGGACTTACTGTAGGAGAACTTGTTTCTTATGGGCGTTTTCCACATCAAAA
AGGATTTGGTCGTTTAACTGCAGAAGATAAAAAAGAAATTGATTGGGCATTGTCAGTTACAGGTACAAGTGAATTTCGTC
ATCGTACTATAAATGATTTAAGTGGTGGACAAAGACAACGCGTGTGGATTGCAATGGCACTAGCCCAACGTACTGATATT
ATTTTCTTAGATGAACCTACAACTTATTTAGATATTTGTCATCAATTAGAAATATTAAATTTAGTCAAAAAGCTCAACGA
AGAAGAAGGTTGCACTATTGTGATGGTTTTACATGACATTAATCAAGCAATTCGCTTCTCAGATCATCTCATTACGATGA
AAGCTGGAGATATTGTTGCTACTGGTCAAACTGATGAAGTGTTAACTAAGGACATTTTAGAAAAGGTATTTAATATTGAT
GGTGTTTTAGATATAGATCCGAGAACAGGGAAACCAATTTTAGTTACTTACGATTTATTCTGTCAGACGTATTCGTGA

Protein sequence : 
MSRLSGEQVKIGYGDSTIINNLDVAIPDGKVTSIIGPNGCGKSTLLKALSRLLSIKEGKINLDGKSIHATSTKEIAKKIA
ILPQSPEVPDGLTVGELVSYGRFPHQKGFGRLTAEDKKEIDWALSVTGTSEFRHRTINDLSGGQRQRVWIAMALAQRTDI
IFLDEPTTYLDICHQLEILNLVKKLNEEEGCTIVMVLHDINQAIRFSDHLITMKAGDIVATGQTDEVLTKDILEKVFNID
GVLDIDPRTGKPILVTYDLFCQTYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-55 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-55 50
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-55 50
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-55 50
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-62 49
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-59 46
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-59 46
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-59 46
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-59 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-58 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-56 45
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-56 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-52 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SERP0306 YP_187902.1 iron ABC transporter ATP-binding protein BAC0164 Protein 4e-52 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SERP0306 YP_187902.1 iron ABC transporter ATP-binding protein VFG0925 Protein 3e-60 48
SERP0306 YP_187902.1 iron ABC transporter ATP-binding protein VFG1042 Protein 3e-52 44