Gene Information

Name : yycF (SERP2534)
Accession : YP_190075.1
Strain : Staphylococcus epidermidis RP62A
Genome accession: NC_002976
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator YycF
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2591085 - 2591786 bp
Length : 702 bp
Strand : -
Note : identified by similarity to OMNI:SA0019; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGGCTAGAAAAGTTGTTGTAGTTGACGATGAAAAACCAATTGCTGATATTTTAGAATTTAATTTAAAAAAAGAAGGTTA
CGACGTATATTGCGCTTATGACGGTAATGACGCAGTAGATTTAATCTATGAAGAAGAACCAGATATCGTCTTACTTGATA
TCATGTTACCTGGTAGAGATGGTATGGAAGTATGTCGTGAAGTGCGTAAAAAGTATGAAATGCCGATTATCATGCTGACA
GCGAAAGATTCTGAAATTGATAAAGTATTAGGCCTTGAATTAGGTGCAGATGATTACGTAACTAAACCATTTAGTACTCG
TGAACTCATCGCACGTGTGAAAGCGAACTTACGCCGTCATTATTCACAACCAGCTCAAGAAGTAAGTGGTGCGACAAATG
AAATTACAATTAAAGATATTGTGATTTATCCAGATGCATATTCAATTAAAAAACGTGGAGAAGACATTGAATTAACGCAT
CGTGAATTCGAGCTATTCCATTATCTTTCTAAACATATGGGTCAAGTCATGACACGTGAACACTTACTACAAACAGTGTG
GGGTTACGATTATTTTGGTGATGTTCGTACTGTGGACGTAACAATTCGCCGTTTAAGAGAAAAAATTGAAGATGATCCAT
CTCATCCAGAATACATTGTGACACGTAGAGGCGTTGGATACTTCCTCCAACAACATGATTAG

Protein sequence : 
MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGMEVCREVRKKYEMPIIMLT
AKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTH
REFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-37 42
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-33 41
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_190075.1 DNA-binding response regulator YycF NC_012469.1.7685629. Protein 1e-70 63
yycF YP_190075.1 DNA-binding response regulator YycF NC_002952.2859905.p0 Protein 3e-56 53
yycF YP_190075.1 DNA-binding response regulator YycF NC_003923.1003749.p0 Protein 3e-56 53
yycF YP_190075.1 DNA-binding response regulator YycF NC_002758.1121668.p0 Protein 3e-56 53
yycF YP_190075.1 DNA-binding response regulator YycF NC_007622.3794472.p0 Protein 2e-56 53
yycF YP_190075.1 DNA-binding response regulator YycF NC_009641.5332272.p0 Protein 3e-56 53
yycF YP_190075.1 DNA-binding response regulator YycF NC_013450.8614421.p0 Protein 3e-56 53
yycF YP_190075.1 DNA-binding response regulator YycF NC_007793.3914279.p0 Protein 3e-56 53
yycF YP_190075.1 DNA-binding response regulator YycF NC_002745.1124361.p0 Protein 3e-56 53
yycF YP_190075.1 DNA-binding response regulator YycF NC_009782.5559369.p0 Protein 3e-56 53
yycF YP_190075.1 DNA-binding response regulator YycF NC_002951.3237708.p0 Protein 3e-56 53
yycF YP_190075.1 DNA-binding response regulator YycF HE999704.1.gene2815. Protein 3e-51 49
yycF YP_190075.1 DNA-binding response regulator YycF NC_012469.1.7686381. Protein 1e-46 48
yycF YP_190075.1 DNA-binding response regulator YycF AE016830.1.gene1681. Protein 2e-48 46
yycF YP_190075.1 DNA-binding response regulator YycF AE000516.2.gene3505. Protein 7e-42 46
yycF YP_190075.1 DNA-binding response regulator YycF AM180355.1.gene1830. Protein 7e-45 45
yycF YP_190075.1 DNA-binding response regulator YycF NC_014475.1.orf0.gen Protein 6e-42 44
yycF YP_190075.1 DNA-binding response regulator YycF AF130997.1.orf0.gene Protein 8e-42 44
yycF YP_190075.1 DNA-binding response regulator YycF NC_005054.2598277.p0 Protein 6e-42 44
yycF YP_190075.1 DNA-binding response regulator YycF FJ349556.1.orf0.gene Protein 7e-41 44
yycF YP_190075.1 DNA-binding response regulator YycF AF155139.2.orf0.gene Protein 3e-38 43
yycF YP_190075.1 DNA-binding response regulator YycF DQ212986.1.gene4.p01 Protein 3e-41 42
yycF YP_190075.1 DNA-binding response regulator YycF NC_010079.5776364.p0 Protein 4e-36 41
yycF YP_190075.1 DNA-binding response regulator YycF NC_002952.2859858.p0 Protein 4e-36 41
yycF YP_190075.1 DNA-binding response regulator YycF NC_007622.3794948.p0 Protein 4e-36 41
yycF YP_190075.1 DNA-binding response regulator YycF NC_003923.1003417.p0 Protein 4e-36 41
yycF YP_190075.1 DNA-binding response regulator YycF NC_013450.8614146.p0 Protein 4e-36 41
yycF YP_190075.1 DNA-binding response regulator YycF NC_002951.3238224.p0 Protein 4e-36 41
yycF YP_190075.1 DNA-binding response regulator YycF NC_007793.3914065.p0 Protein 4e-36 41
yycF YP_190075.1 DNA-binding response regulator YycF NC_002758.1121390.p0 Protein 4e-36 41
yycF YP_190075.1 DNA-binding response regulator YycF AE015929.1.gene1106. Protein 4e-31 41
yycF YP_190075.1 DNA-binding response regulator YycF HE999704.1.gene1528. Protein 6e-35 41
yycF YP_190075.1 DNA-binding response regulator YycF AF162694.1.orf4.gene Protein 5e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_190075.1 DNA-binding response regulator YycF VFG1702 Protein 1e-37 42
yycF YP_190075.1 DNA-binding response regulator YycF VFG0596 Protein 2e-33 41
yycF YP_190075.1 DNA-binding response regulator YycF VFG1563 Protein 2e-37 41