|
Name : SERP2499 (SERP2499) Accession : YP_190041.1 Strain : Staphylococcus epidermidis RP62A Genome accession: NC_002976 Putative virulence/resistance : Unknown Product : cassette chromosome recombinase B Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1961 EC number : - Position : 2558668 - 2560296 bp Length : 1629 bp Strand : + Note : identified by similarity to OMNI:NTL01SA0061; match to protein family HMM PF00239 DNA sequence : ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTTTCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTA TTTCAGGTAAATCTATGAATCGACCTGAGCTCCAACGTATATTGAAGGATGCGAAAGATGGCTATATCGACTGTGTTATG GTCTACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA ATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCATCGGGTAAGCTCATGTTACAAATACTTGCGAGTTTCTCAG AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA TATATTCGAGTCCTATGCCAAAGGCCATGGCTATCGTAAAATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAA AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTTAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACACTTAAAGAC GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAG TAACACACGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT GAAGTACAAATCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGCCTT TATTTGATGCCAAAGAAATCAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA ACTTAATAACGAAATCATAAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTGTTTT TGCCCCAAACACTATATCTTACTATTTAG Protein sequence : MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRILKDAKDGYIDCVM VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYD EVQIKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccrB | YP_039530.1 | site-specific recombinase | Not tested | Type-II SCCmec | Protein | 0.0 | 100 |
| SERP2499 | YP_190041.1 | cassette chromosome recombinase B | Not tested | Type-II SCCmec | Protein | 0.0 | 100 |
| ccrB | YP_492757.1 | cassette chromosome recombinase B | Not tested | Type-IV SCCmec | Protein | 0.0 | 99 |
| ccrB | NP_370585.1 | cassette chromosome recombinase B | Not tested | Type-II SCCmec | Protein | 0.0 | 99 |
| ccrB | NP_373297.1 | cassette chromosome recombinase B | Not tested | Type-II SCCmec | Protein | 0.0 | 99 |
| ccrB2 | BAC67561.1 | cassette chromosome recombinase B2 | Not tested | Type-IVc SCCmec | Protein | 0.0 | 99 |
| ccrB | BAA82196.1 | site-specific recombinase | Not tested | Type-II SCCmec | Protein | 0.0 | 99 |
| ccrB | NP_644853.1 | cassette chromosome recombinase B | Not tested | Type-IV SCCmec | Protein | 0.0 | 99 |
| SAMSHR1132_00400 | YP_005324563.1 | site-specific recombinase | Not tested | Type-IIIinv SCCmec | Protein | 0.0 | 99 |
| ccrB | BAB72109.1 | cassette chromosome recombinase B | Not tested | Type-IVa SCCmec | Protein | 0.0 | 98 |
| ccrB | BAB72128.1 | cassette chromosome recombinase B | Not tested | Type-IVb SCCmec | Protein | 0.0 | 98 |
| ccrB2 | DAA01833.1 | cassette chromosome recombinase B type 2 | Not tested | SCCpbp4 | Protein | 0.0 | 92 |
| SE0036 | NP_763591.1 | cassette chromosome recombinase B | Not tested | SCCpbp4 | Protein | 0.0 | 92 |
| ccrB3 | BAB47597.1 | cassette chromosome recombinase B3 | Not tested | Type-III SCCmec | Protein | 0.0 | 87 |
| ccrB3 | YP_005754051.1 | site-specific recombinase CcrB3 | Not tested | Type-XI SCCmec | Protein | 0.0 | 87 |
| ccrB3 | BAB46972.1 | cassette chromosome recombinase B3 | Not tested | Type-IIIinv SCCmec | Protein | 0.0 | 87 |
| SSP0035 | YP_300125.1 | cassette chromosome recombinase B | Not tested | SCC15305RM | Protein | 0.0 | 84 |
| ccrB | YP_042165.1 | site-specific recombinase | Not tested | SCC476 | Protein | 0.0 | 81 |
| ccrB1 | BAB83487.2 | site-specific recombinase | Not tested | SCC 12263 | Protein | 0.0 | 81 |
| SE0056 | NP_763611.1 | cassette chromosome recombinase B | Not tested | SCCpbp4 | Protein | 0.0 | 73 |
| ccrB4 | DAA01835.1 | cassette chromosome recombinase B type 4 | Not tested | SCCpbp4 | Protein | 0.0 | 73 |
