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Name : SERP2498 (SERP2498) Accession : YP_190040.1 Strain : Staphylococcus epidermidis RP62A Genome accession: NC_002976 Putative virulence/resistance : Unknown Product : cassette chromosome recombinase A Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1961 EC number : - Position : 2557297 - 2558646 bp Length : 1350 bp Strand : + Note : identified by similarity to OMNI:NTL01SA0062; match to protein family HMM PF00239 DNA sequence : ATGAAACAAGTCATAGGCTATTTACGTCAAAGTACGATGAAACAACAATCTCTTGCAGCACAGAAACAAGCTATCGAAGC AATAACCGAAAAACATCATATTCAACATATCAACTTTTATAGCGACAAACAATCAGGACGCAAAGATAATCGTAGTGGGT ATCGACAAATAACACAATTAATTCAACAAGGACAGTGTGACATATTATGCTGTTATCGTCTTAATAGGTTGCATCGTAAT TTGAAAAATGCATTAAAACTCATCAAATTATGTCAAACATATCGTGTTCATATCTTAAGTGTGCATGATGGTTATTTTGA TATGGATCAAGCTTTCGACCGATTCAAGCTTAATATTTTTATCAGCTTGGCCGAACTTGAATCAGATAACATTGGAGAAC AAGTCAGAAATGGGCTTCAAGAAAAAGCAAAGCAAGGTCGATTGATTACAACCCATGCGCCCTTTGGTTACGAATATCAC AACGGAACATTCATCATCAATCAAAATGAGTCACCAACGGTAAAGGCTGTATTCAATTATTACATTAAAGGTCATGGTTA TAAGAAAATTGCACAGTTATTAGAAGAAGATAACACGTATATCAATCGACAACCCTATCAAGTTCGTAACATTATTATCA ATCCTAATTATTGTGGTCGTGTCAACAATCAATATGGTCAATTCGACAATATGTTTCCTTCTATTGTTTCCACAAGTATA TATGAGCAAGCGCAGAGACTTCGATTGCAAAAACAAACCAAACAGACACCTTCGGATAATCAACTCAAACAAAAAATCAA ATGCCCATGTTGTAATGCAACACTTACAAATATGACCATTAGAAAAAAGAATCATACATTACGTTACTACGTCTGTCCTA AAAACATGAATGCTTCACGCTTTGTCTGTGATTTTAAAGGCATCAATGCACAAACACTTGAAGATAAAGTATTAGAAGTG TGCCGAGACTTTTATCAAAATCAACGCATCTACACAAAAATTAAAAGTGCGATTGACAAACGCATCAAAAGACAAAGAAA CATAGAAAAACATCACACATTGACTCAAAAACAACTGATAGAAAAGTTGGCACAAGGCATCATTGATGCAGAAACGTTCA GAGAACAAACGCAATCATTACGTCAACAACCGCAACGCACTACATCTATCAATGGGCATCAAATACAAAACACCATTCAA AATATTATTCAAAAACGTTTCACGTTAAACATGCTGTATCCCTACATTGATGAAATTCTTATCACAAAAAGTAAAACACT AATGGGTATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAACAACGCAATCGTCAATTGCATAA Protein sequence : MKQVIGYLRQSTMKQQSLAAQKQAIEAITEKHHIQHINFYSDKQSGRKDNRSGYRQITQLIQQGQCDILCCYRLNRLHRN LKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRFKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYH NGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEV CRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQKQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQNTIQ NIIQKRFTLNMLYPYIDEILITKSKTLMGIYFKNEPLNIVNQTTQSSIA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccrA | YP_039531.1 | site-specific recombinase | Not tested | Type-II SCCmec | Protein | 0.0 | 100 |
| SERP2498 | YP_190040.1 | cassette chromosome recombinase A | Not tested | Type-II SCCmec | Protein | 0.0 | 100 |
| ccrA | NP_644854.1 | cassette chromosome recombinase A | Not tested | Type-IV SCCmec | Protein | 0.0 | 99 |
| ccrA | YP_492758.1 | cassette chromosome recombinase A | Not tested | Type-IV SCCmec | Protein | 0.0 | 97 |
| ccrA2 | BAC67560.1 | cassette chromosome recombinase A2 | Not tested | Type-IVc SCCmec | Protein | 0.0 | 97 |
| SAMSHR1132_00410 | YP_005324564.1 | site-specific recombinase | Not tested | Type-IIIinv SCCmec | Protein | 0.0 | 97 |
| ccrA2 | DAA01834.1 | cassette chromosome recombinase A type 2 | Not tested | SCCpbp4 | Protein | 0.0 | 96 |
| ccrA | BAA82194.1 | site-specific recombinase | Not tested | Type-II SCCmec | Protein | 0.0 | 96 |
| SE0037 | NP_763592.1 | cassette chromosome recombinase A | Not tested | SCCpbp4 | Protein | 0.0 | 96 |
| ccrA | BAB72108.1 | cassette chromosome recombinase A | Not tested | Type-IVa SCCmec | Protein | 0.0 | 96 |
| ccrA | NP_370586.1 | cassette chromosome recombinase A | Not tested | Type-II SCCmec | Protein | 0.0 | 96 |
| ccrA | NP_373298.1 | cassette chromosome recombinase A | Not tested | Type-II SCCmec | Protein | 0.0 | 96 |
| ccrA | BAB72127.1 | cassette chromosome recombinase A | Not tested | Type-IVb SCCmec | Protein | 0.0 | 95 |
| ccrA1 | YP_005754052.1 | site-specific recombinase CcrA1 | Not tested | Type-XI SCCmec | Protein | 4e-169 | 78 |
| ccrA1 | BAB83486.1 | site-specific recombinase | Not tested | SCC 12263 | Protein | 3e-167 | 76 |
| ccrA1 | YP_184952.1 | cassette chromosome recombinase A1 | Not tested | Type-I SCCmec | Protein | 2e-166 | 76 |
| SSP0036 | YP_300126.1 | cassette chromosome recombinase A | Not tested | SCC15305RM | Protein | 3e-167 | 76 |
| ccrA1 | BAA86648.1 | cassette chromosome recombinase A1 | Not tested | Type-I SCCmec | Protein | 1e-166 | 76 |
| ccrA1 | YP_042166.1 | site-specific recombinase | Not tested | SCC476 | Protein | 1e-165 | 75 |
| ccrA3 | BAB47596.1 | cassette chromosome recombinase A3 | Not tested | Type-III SCCmec | Protein | 6e-159 | 74 |
| ccrA3 | BAB46971.1 | cassette chromosome recombinase A3 | Not tested | Type-IIIinv SCCmec | Protein | 6e-159 | 74 |
| ccrA4 | DAA01836.1 | cassette chromosome recombinase A type 4 | Not tested | SCCpbp4 | Protein | 1e-109 | 50 |
| SE0057 | NP_763612.1 | cassette chromosome recombinase A | Not tested | SCCpbp4 | Protein | 2e-109 | 50 |
